Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq117 176 2e-39 >seq117 Length=8551 Score = 176 bits (194), Expect = 2e-39 Identities = 211/279 (76%), Gaps = 11/279 (4%) Strand=Plus/Plus Query 57946 CGTCGACTCCATCGTCACCGACCCGCCCTACGAACTGGGATTCATGGGCAAGAAGTGGGA 58005 ||| ||| | |||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct 7710 CGTTGACGCAATCGTCACCGACCCGCCCTACGGCCTCGGCTTCATGGGCAAGAAATGGGA 7769 Query 58006 CGGCTCGGGCATCGCTTTCGATGTCGAGATGTG--GGAGCAATGTCTGCGGGTCCTCAAG 58063 |||| | | || || || || ||| | | ||| || ||||| |||||| Sbjct 7770 CGGC-CTTCCCCCG---TCACTG--GA-ATGGGCCGAAGCG-TGCTACCGGGTACTCAAG 7821 Query 58064 CCGGGTGGGCACCTGCTCGCCTTCGGCGGCTCCCGCACCTGGCACCGGCTGACCGTGGCC 58123 || ||||| ||| | ||| ||||| ||| |||||||||||||||| || |||| ||| Sbjct 7822 CCCGGTGGACACATCGCCGCTTTCGGTGGCACCCGCACCTGGCACCGCCTCGCCGTCGCC 7881 Query 58124 ATCGAGGACGCGGGCTTCGAGATTCGTGACTCCATCGCCTGGCTCTACGGCAGCGGTTTC 58183 ||||| ||||| || ||||| || || |||||| |||||||||| ||||| || ||| Sbjct 7882 ATCGAAGACGCAGGATTCGAAATGCGCGACTCCCTCGCCTGGCTATACGGGTCAGGATTC 7941 Query 58184 CCGAAGTCGCTCGACGTATCCAAGGCCATCGACAAGGCC 58222 |||||||| | ||||| ||||| |||||| ||||| Sbjct 7942 CCGAAGTCCTTGGACGTGGGGAAGGCAATCGAC-AGGCC 7979 Score = 100 bits (110), Expect = 1e-16 Identities = 130/178 (73%), Gaps = 9/178 (5%) Strand=Plus/Plus Query 58245 TCGCCGCTCCGGCGACT---GAGGCAGCCCAGCAGTGGCAGGGCTGGGGCACGGCGCTCA 58301 || |||| || |||||| ||||| || ||||||| | |||||||||||||| || | Sbjct 8303 TCACCGCCCCCGCGACTCCTGAGGCCGC---GCAGTGGGACGGCTGGGGCACGGCTCTAA 8359 Query 58302 AGCCCGCGTTCGAGCCCATCGTGGTCGCACGGAAACCCCTGGC---GGGCACGGTGGCGG 58358 |||||||||| ||||| |||||| |||| || || ||||| || | || || || Sbjct 8360 AGCCCGCGTTTGAGCCTATCGTGCTCGCCCGTAAGCCCCTCGCCGAGAAGACCGTTGCTA 8419 Query 58359 CGAACGTCCTGGAGCACGGTACGGGGGCGTTGAACATCGACGCCTGCCGCATCGGCAC 58416 ||||||||| | | | || || || || | ||| | ||||| ||| | ||||| || Sbjct 8420 GGAACGTCCTCGCGTATGGGACCGGAGCAATCAACGTGGACGCGTGCAGGATCGGGAC 8477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237345160668355