Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq393 96.9 3e-15 seq440 82.4 6e-11 >seq393 Length=11819561 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || ||||| |||||| | || || || ||||| ||| |||| |||| Sbjct 8005510 TTTCAGATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAG 8005451 Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| ||| || ||| | | || ||| ||||| || || ||||| | || Sbjct 8005450 AGCTC-CGACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCC 8005392 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||||||||| || || | || || || ||||| || || | | || |||| || Sbjct 8005391 GGATCAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGGACTTTGGCTGA 8005332 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCA 107758 ||||||||| ||||||||||| || ||||| Sbjct 8005331 CTACAACATCCAAAAGGAGTCGACTTTGCA 8005302 >seq440 Length=7283533 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||| ||||||||| | || | ||| || || ||||| || |||| | ||| |||| || Sbjct 6972848 GGACCAGCAGAGATTGATCTTTGCAGGAAAGCAGCTTGAAGACGGCCGAACTTTGGCTGA 6972789 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||||| ||||||||||||||| | ||| |||| ||| Sbjct 6972788 TTACAACATCCAAAAGGAGTCTACGCTTCACTTGGTCTTG 6972749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398873372775745