Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq440 132 4e-26 seq350 132 4e-26 seq664 122 7e-23 seq393 116 3e-21 seq510 91.5 1e-13 >seq440 Length=7283533 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||||||||| ||||| || || || ||||| ||||| || | ||| ||| Sbjct 661145 ACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGACC 661086 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || || || | |||||||| ||||| ||||| || ||||||||||| Sbjct 661085 ATCCTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGGGGGATACCCTCTTT 661026 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||||| | || | |||||||| || || || || || | Sbjct 661025 GTCTTG-AATCTTAGCCTTGACGTTGTCAATTGTGTCAGAGCTCTCGACCTCGAGGGTAA 660967 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || ||||| || || ||||| Sbjct 660966 TGGTCTTTCCCGTCAAAGTCTTAACGAAGATTTGCAT 660930 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||||||||| ||||| || || || ||||| ||||| || | ||| || Sbjct 660917 ACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGTCC 660858 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || |||||||| || || || | ||||| || ||||| ||||| || ||||||||||| Sbjct 660857 GTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCTTT 660798 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||| || | || | ||||| || ||| || || | ||| || Sbjct 660797 GTCTTGGATCTTGGCTTTAACGTTGTCAATGGTGTCGGAGCTTTCAACCTCCAAAGTAAT 660738 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || || || ||||| Sbjct 660737 GGTTTTTCCCGTCAAAGTCTTGACGAAAATTTGCAT 660702 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| ||||| || || || ||||| ||||| || | ||| || || Sbjct 660457 AGAACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCGTCC 660398 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 |||||||| || || || | || | || ||||||||||| |||||||| || ||||| Sbjct 660397 TCGAGTTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATACCTTCCTTGTCC 660338 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||| || | || | |||||||| ||| || || || || || || Sbjct 660337 TGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTC 660278 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | || ||||| || |||||||| Sbjct 660277 TTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 660246 >seq350 Length=9129079 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| ||| || ||||| |||||||| ||||| || || ||||| |||||||| Sbjct 5338504 TCCTCCTCTCAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGC 5338563 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || ||||| || || || |||||| | ||||||||||| || Sbjct 5338564 GAGTGTCCTTCCGTCTTCAAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTGG 5338623 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || | || || ||| | || | ||||| || ||| || Sbjct 5338624 GATCCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGATTCAAC 5338683 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || || ||||||||||| ||||| ||||||||||| Sbjct 5338684 CTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 5338734 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | | ||| ||||| ||||| ||||| ||||| || ||||| || || || Sbjct 2564625 CCACCCCTAAGCCTCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCT 2564566 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || ||||| || || || |||| | ||| || ||||| || || Sbjct 2564565 AGTGTTCGACCATCCTCTAGTTGCTTCCCTGCGAATATAAGTCTCTGTTGATCAGGTGGT 2564506 Query 29680 ATACCCTCTTTGTCTTGTAATT 29701 || ||||||||||| || |||| Sbjct 2564505 ATCCCCTCTTTGTCCTGCAATT 2564484 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 |||||| | ||| ||||| || || || || | ||||| || || | ||||| ||||| Sbjct 8498767 ACGCAGAAGCAAGTGAAGGGTCGAGTCATTCTTGATGTTGTAGTCACCCAATG-TGCGAC 8498825 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || || |||| ||||||| | || | || ||||| ||||||||||| ||||||| Sbjct 8498826 CATCTTCAAGATGTTCGCCAGCAAAGATAAGCCTCTGCTGGTCCGGCGGAATGCCCTCTT 8498885 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA--CTTCAAGAG 29746 | || || ||| || | || || |||| | |||||||| ||| | || | ||| Sbjct 8498886 TATCCTG-AATCTTGGCCTTCACGTTTTCGATGGTGTCAGAGTCTTCCAACGTTAAGGAG 8498944 Query 29747 TTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | | ||| || || || || || ||| | |||||||| Sbjct 8498945 ATGAACTTT--CCTGTCAAAGTCTTTACATAGATCTGCAT 8498982 >seq664 Length=12074320 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||||| ||||| ||||| || || || || || || || ||||| || Sbjct 3114145 CCTCCACGGAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCC 3114204 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || ||||| || | ||||| |||||||| ||||| || Sbjct 3114205 AAGGTGCGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGAGGG 3114264 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || || ||| | || | ||||| || ||| || Sbjct 3114265 ATGCCTTCCTTATCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCGGAGCTTTCGACC 3114324 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| ||||| |||||||| ||||||||||| || || ||||| Sbjct 3114325 TCCAAAGTGATAGTCTTGCCAGTCAAGGTTTTAACGAAGATTTGCAT 3114371 >seq393 Length=11819561 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||||| ||||| ||||| || || || || || || || ||||| || Sbjct 8004366 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCC 8004425 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| || || || ||||| || | |||||||| ||||| ||||| || Sbjct 8004426 AAGGTACGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAATCTCTGCTGGTCCGGAGGG 8004485 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || ||||| || | || || || | || | |||||| || || || Sbjct 8004486 ATACCTTCCTTGTCCTGGATCTTAGCCTTTACGTTGTCGATAGTGTCGGAGCTCTCAACC 8004545 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| ||||| || ||||| ||||||||||| || || ||||| Sbjct 8004546 TCCAAAGTGATAGTCTTTCCAGTCAAGGTTTTAACGAAGATTTGCAT 8004592 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||||||||||| |||||||| || || || || ||||| || || || Sbjct 356985 CCTCCACGGAGACGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 357044 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || || || || |||||||||| ||||| ||||| || Sbjct 357045 AGTGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAATATCAATCTCTGCTGGTCCGGAGGG 357104 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || ||| | || | ||||| || ||| || Sbjct 357105 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGAGGATTCGACC 357164 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || || |||| |||||| || || |||||||| || Sbjct 357165 TCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 357214 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | ||| || || || || || |||||||| || || || | || || ||| Sbjct 8004609 AGGACGAGATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTTCGGCCATCT 8004668 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || || || | |||||||| ||||| ||||| ||||||||||| ||||| Sbjct 8004669 TCAAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 8004728 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | ||||| | || | ||||| || || || || | ||| || || Sbjct 8004729 TG-AATCTTAGCCTTGACGTTATCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGT 8004787 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| |||||||| Sbjct 8004788 CTTTCCCGTCAACGTCTTAACAAAGATCTGCAT 8004820 >seq510 Length=7398753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| || || ||||| || ||||| ||||| |||||||||||||||| |||| | Sbjct 7058987 ACGCAAGACAAAGTGAAGTGTTGATTCCTTTTGGATGTTATAATCCGCAAGGGTGTGGCC 7058928 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| | ||| |||| |||||| |||| | |||||| || || || | || | || | Sbjct 7058927 ATCCTTGAGCTGTTCACCAGCAAATATGAGTCTTTGTTGGTCTGGTGCGATCCATTCCGT 7058868 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTC 29726 ||| | ||| |||| ||| ||| | || |||||||| Sbjct 7058867 GTC-TAAAATCTTTGTTTTTACATTGTCAACAGTGTC 7058832 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/210 (70%), Gaps = 16/210 (8%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAG---------- 29639 || || ||||| ||||||||||||||||| | || ||| ||| ||||| Sbjct 7059206 GTTGACTCTTTCTGAATGTTATAATCCGCTAAAGTCCGACCATCTTCGAGCTGCCTCGAG 7059147 Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 |||||| ||| || |||| | ||| || || || || | ||||| || ||||| || Sbjct 7059146 TTGTTTACCATCAAATATGAGTCTCTGTTGGTCTGGTGCGATACCTTCCTTGTCATGGGC 7059087 Query 29700 TTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT--ACTTCAAGAGTTATAGTTTTG 29757 ||| ||| ||| |||| | |||| | || ||| ||||| | |||||| ||||| Sbjct 7059086 CTTTGCTTTTACATTTTCGATTTTGTCTG--AGCTCTTAACTTCCAAAGTTATGGTTTT- 7059030 Query 29758 CCAGTTAAGGTT-TTAACAAATATCTGCAT 29786 | ||||||| || ||||| |||||||| Sbjct 7059029 TATGGTAAGGTTCTTGACAAACATCTGCAT 7059000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385215890124405