Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_023604.1 Length=44306 Score E Sequences producing significant alignments: (Bits) Value seq334 224 3e-54 >seq334 Length=7771 Score = 224 bits (248), Expect = 3e-54 Identities = 447/652 (69%), Gaps = 20/652 (3%) Strand=Plus/Minus Query 682 TCGATCCCGCGGCAGGTCGGGAAGACCTACCTGATCGG----CTGTATCGTCTTCGCGCT 737 ||||| || || |||||||||||||| ||| ||| || |||| | |||||| | Sbjct 7362 TCGATTCC-CGCCAGGTCGGGAAGACGTACACGATTGGTTCGCTGTGT----TTCGCGTT 7308 Query 738 CGCGCTGCTGACGCCGGGGCTCACCGTGATT-TGGACGGCGCACCGGACGAAGACGGCGA 796 ||| || ||||||||||| || | || ||||||||||| |||||| ||| Sbjct 7307 GGCGATGGTGACGCCGGGG-TCTTTGATCTTGTGGACGGCGCATCGGACGCGTACGCATG 7249 Query 797 AGGAAACGTTCGCGTCCATGCGGGCGATGTGCGAAAACCCGCTGGTCAAGCGGCACGTGA 856 ||| ||||| | ||| ||| | |||| || ||| | | |||| | ||| Sbjct 7248 CGGAGACGTTTGGGTCGATGGCTGGGATGGCTGAGCGGCCGTCGATTAAGCCGTTTGTGG 7189 Query 857 AGGACGT-CGTGCTGGCGCGCGGCGACGAGGGTATCTACCTCAAGAACGGCTCGCGCATC 915 || || ||| | |||| || || ||| ||| |||||||||| |||||||| Sbjct 7188 AGTCGGTGCGT-CGGGCGAATGGTGAGCAGGCGATCGTTTTCAAGAACGGTTCGCGCATT 7130 Query 916 ATGTTCGGCGCTCGCGAGAACGGCTTCGGGCTCGGCTTCGCGAAGGTCGGCGTCCTGGTG 975 |||| || ||||||||| |||||||| | || ||||||||||| | ||| ||| | Sbjct 7129 TTGTTTGGTGCTCGCGAGTCTGGCTTCGGTCGTGGGTTCGCGAAGGTGGACGTGCTGATC 7070 Query 976 CTCGACGAGGCGCAGCGACTCACGTCCAAAGCAATGGACGACCTGATCCCGACGATGAAC 1035 |||| ||||||||| |||||| || || ||||| ||| || | ||| | | |||| Sbjct 7069 TTCGATGAGGCGCAGATCCTCACGGAGAAGGCCATGGAGGACATGGTTCCGGCAACGAAC 7010 Query 1036 ACCGTCGAGAACCCGCTTGTGCTGCTCACGGGTACGCCACCGCGGCCGACGGACGCCGGC 1095 | | || || ||| | | | || || || ||||| || |||||| | ||| Sbjct 7009 GCGGCACCTAATGGTCTGGTGTTCATGATCGGCACTCCCCCGCGCCCCACGGACCCGGGC 6950 Query 1096 GAAGTGTTCACGATGCTTCGGCAAGACGCGCTCGACGGCGA--ATCGGAAGGCACGCTGT 1153 || |||||| |||||| ||| | | || || ||||| | | | | | | ||| Sbjct 6949 GAGGTGTTCTCGATGCGCCGGGACGCGGCACTGTCGGGCGAGGACCCGGACGT--GATGT 6892 Query 1154 ACGTCGAGTTCTCCGCGGACCGCGACGCGAACCCGGACGATCGGGCGCAGCTGCGGAAGG 1213 |||| ||| | || || || ||||||||||||||||| || ||| | |||||||| Sbjct 6891 ACGTGGAGCTGTCGGCCGATAAGGACGCGAACCCGGACGACCGTGCGGCGTGGCGGAAGG 6832 Query 1214 CGAACCCGTCGTATCCGCACCGGACCAGCGAGCGCGCGATCCGGCGTATGCGGAAGAACC 1273 |||||||||||| ||||||||||| | ||| |||||||| ||| ||||||||| | Sbjct 6831 CGAACCCGTCGTTCCCGCACCGGACGGGTGAGGGCGCGATCTTGCGCATGCGGAAGCTGC 6772 Query 1274 T---CACCGAGGACTCGTTCCTCCGCGAGGCGTTCGGTATCTGGGACGAGAA 1322 | | | || ||||| | ||| |||| | || |||||||||||||| Sbjct 6771 TGGGGTCTGTCGAGTCGTTTCGCCGTGAGGGTCTGGGCATCTGGGACGAGAA 6720 Score = 147 bits (162), Expect = 6e-31 Identities = 134/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 6980 TCGTCGGCGACTTCGCGAACGGCATCCGGTGGGGCGTTCAGCGGGAAATCCCGCTGGAAA 7039 |||| ||||||||| | |||||||| || |||||| |||||||| | | || | || Sbjct 3213 TCGTTGGCGACTTCACCAACGGCATTCGCTGGGGCATTCAGCGGAACCTGCCCGTTGAGC 3154 Query 7040 TGATCAAGTACGGCGATCCCGACGGTCAGGGCGACTTGAAGCGTCACAACCAGATCGCGC 7099 |||||| |||||||| || ||||| ||||||||| || || | ||||||||||| | Sbjct 3153 TGATCACCTACGGCGACCCGGACGGGCAGGGCGACCTGCGCCGCAAGAACCAGATCGCCC 3094 Query 7100 TTCGGCTCGAAATCGTCTACGGCTGGTACGTCTTCACCGACCGCTTCGT 7148 | || || || ||||||| |||||||||||||||||| || |||||||| Sbjct 3093 TGCGACTGGAGATCGTCTTCGGCTGGTACGTCTTCACGGATCGCTTCGT 3045 Score = 145 bits (160), Expect = 2e-30 Identities = 253/354 (71%), Gaps = 18/354 (5%) Strand=Plus/Minus Query 6280 CTGCCCCGCAACATCGCCGACGGCATGGTGA--AGGACGTCGTGCAGGGCAGCACCGTTG 6337 |||||||||||||| || ||||||||| | | | ||| || || | || |||| Sbjct 3919 CTGCCCCGCAACATTGCGGACGGCATGATCACCAAGACTCAGTCCACCTCG--ACGGTTG 3862 Query 6338 CTGCTCTGTCGGCTCGCCG-GCCGCAGCGCTTCGGCAACGAGGAC-ATCATCACCTT--- 6392 | ||||||| | || | ||||||| ||||| | ||| ||| | ||||| Sbjct 3861 CGAAGCTGTCGGGT-GCTGAGCCGCAGAAGTTCGGTGAGACTGACTATC-TGACCTTTGA 3804 Query 6393 CACGGGCCGGCCGAAGGCCGAGTTCGTGGGTGAGGGTCAGGCGAAGTCGTCCACCACGGG 6452 |||| || ||| ||||||||||||| ||||| ||| |||||||||| || Sbjct 3803 CACGTTCCC-CCGC--GCCGAGTTCGTGGAGGAGGGCGCTAACAAGGCGTCCACCACTGG 3747 Query 6453 CGAGTTCGACTTCGTGACCAGCACTCCGAAGAAGACGCAGGTCACGATGCGCTTCAACGA 6512 | ||||| || ||||||| | || ||| | |||||||| |||||||||||| | Sbjct 3746 TGCGTTCGGCTCCGTGACCGCTAAGCCTCGCAAGGCTCAGGTCACCATGCGCTTCAACCA 3687 Query 6513 GGAAGTCCAGTGGGCCGACGAGGACTACCAGCTGGGCGT--TCTCGACACGCTCTCGGAG 6570 ||| |||||||||||||| ||||||||||||||| ||| ||||| || ||| || || Sbjct 3686 GGAGGTCCAGTGGGCCGATGAGGACTACCAGCTGAACGTCCTCTCG-CA-GCTGTCCCAG 3629 Query 6571 GCCGGCGCCGAGGCTCTGGCACGCGCGCTCGATCTGGGTCTGTATCACCGGATC 6624 || ||||||| ||| | ||||| ||||| || || ||||| ||||| ||| Sbjct 3628 AAGGGTTCCGAGGCCCTGTCTCGCGCTCTCGACCTCGGCCTGTACCACCGCATC 3575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141656414060280