Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_023705.1 Length=41650 Score E Sequences producing significant alignments: (Bits) Value seq334 174 4e-39 >seq334 Length=7771 Score = 174 bits (192), Expect = 4e-39 Identities = 140/169 (83%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 7844 TCGTCGGCGACTTCGCCAACGGCATCCACTGGGGCGTTCAGCGGGATATCCCCGTCGAGC 7903 |||| ||||||||| |||||||||| | ||||||| |||||||| | | ||||| |||| Sbjct 3213 TCGTTGGCGACTTCACCAACGGCATTCGCTGGGGCATTCAGCGGAACCTGCCCGTTGAGC 3154 Query 7904 TCATCAAGTACGGCGATCCCGACGGGCAAGGCGACCTGAAGCGCCACAACCAGATCGCGC 7963 | |||| |||||||| || |||||||| ||||||||| ||| | ||||||||||| | Sbjct 3153 TGATCACCTACGGCGACCCGGACGGGCAGGGCGACCTGCGCCGCAAGAACCAGATCGCCC 3094 Query 7964 TTCGGCTCGAAATCGTCTACGGCTGGTACGTCTTCACCGACCGCTTCGT 8012 | || || || ||||||| |||||||||||||||||| || |||||||| Sbjct 3093 TGCGACTGGAGATCGTCTTCGGCTGGTACGTCTTCACGGATCGCTTCGT 3045 Score = 154 bits (170), Expect = 4e-33 Identities = 278/397 (70%), Gaps = 16/397 (4%) Strand=Plus/Minus Query 7135 CTCCCCCGCAACATCGCGGACGGGATGGTGA--AGGACGTCGTGCAGGGCTCGACGGTCG 7192 || ||||||||||| |||||||| ||| | | | ||| || || ||||||||| | Sbjct 3919 CTGCCCCGCAACATTGCGGACGGCATGATCACCAAGACTCAGTCCAC--CTCGACGGTTG 3862 Query 7193 CCGCGCTGTCGGCGCGCA-AGCCGCAGCGATTCGGCAATGAG---GAC-ATCATCACTTT 7247 | |||||||| | || |||||||| ||||| |||| ||| ||| |||| Sbjct 3861 CGAAGCTGTCGG-GTGCTGAGCCGCAGAAGTTCGG---TGAGACTGACTATCTGACCTTT 3806 Query 7248 CA-ACGGCCGGCCGAAGGCTGAGTTCGTGGGTGAGGGTCAACAGAAGTCGAGCACCACCG 7306 | ||| | ||| || |||||||||| ||||| | ||| || |||||| | Sbjct 3805 GACACGTTCCCCCGC--GCCGAGTTCGTGGAGGAGGGCGCTAACAAGGCGTCCACCACTG 3748 Query 7307 GCGAATTCGACTTCGTGACCAGCACGCCGAAGAAGGCGCAGGTCACGATGCGCTTCAACG 7366 | | |||| || ||||||| | ||| ||||| |||||||| |||||||||||| Sbjct 3747 GTGCGTTCGGCTCCGTGACCGCTAAGCCTCGCAAGGCTCAGGTCACCATGCGCTTCAACC 3688 Query 7367 AAGAGGTTCAGTGGGCCGACGAGGACTACCAGCTCGGCGTGCTCGCGACCCTGAGCGAGG 7426 | ||||| ||||||||||| |||||||||||||| ||| ||| || ||| | || Sbjct 3687 AGGAGGTCCAGTGGGCCGATGAGGACTACCAGCTGAACGTCCTCTCGCAGCTGTCCCAGA 3628 Query 7427 CCGGCGCCGAAGCACTGGCGCGCGCGCTGGATCTGGGTCTGTATCACCGGATCAACCCGC 7486 || |||| || ||| | ||||| || || || || ||||| ||||| ||| | || Sbjct 3627 AGGGTTCCGAGGCCCTGTCTCGCGCTCTCGACCTCGGCCTGTACCACCGCATCCAGCCTT 3568 Query 7487 TGACGGGAACCGTGATCCCCGGCTGGTCGAACTACCT 7523 |||||| | || ||| |||| ||| |||||||| Sbjct 3567 CGACGGGCGCTGTCATCACCGGGTGGGACAACTACCT 3531 Score = 145 bits (160), Expect = 2e-30 Identities = 425/643 (66%), Gaps = 19/643 (3%) Strand=Plus/Minus Query 656 CCCGACAGGTCGGCAAGACGTACCTGATCGGCTGCATCGTGTT-CGCCCTGGCGCTGCTC 714 |||| |||||||| ||||||||| ||| || | | ||||| ||| ||||| || | Sbjct 7356 CCCGCCAGGTCGGGAAGACGTACACGATTGGTTCGCT-GTGTTTCGCGTTGGCGATGGTG 7298 Query 715 ACGCCTGGGCTGACTG-TCATCTGGACCGCGCACCGGACGAAGACCGCGAAGGAAACGTT 773 ||||| ||| | || || | ||||| ||||| |||||| || ||| ||||| Sbjct 7297 ACGCCGGGG-TCTTTGATCTTGTGGACGGCGCATCGGACGCGTACGCATGCGGAGACGTT 7239 Query 774 CGGCTCGATGAAGGCCATGTGCGCAACG-CCGCTGGTGAACGCGCACGTGCGGAACGTCA 832 || |||||| | ||| || | || ||| | | || || ||| | || Sbjct 7238 TGGGTCGATGGCTGGGATG-GCTGAGCGGCCGTCGATTAAGCCGTTTGTGGAGTCGGT-- 7182 Query 833 GCGACGCGCGC--GGCGACGAGGGAATCTATCTGCACAACGGGAGCCGGATCCTGTTCGG 890 ||| || ||| || || ||| ||| | | | ||||| || || |||| || Sbjct 7181 GCGTCGGGCGAATGGTGAGCAGGCGATCGTTTTCAAGAACGGTTCGCGCATTTTGTTTGG 7122 Query 891 CGCGCGTGAGAACGGTTTCGGTCTGGGCTTCGCCGGCGTCGGAATCCTCGTGCTCGACGA 950 || || ||| || ||||||| || ||||| || | | || | |||| || Sbjct 7121 TGCTCGCGAGTCTGGCTTCGGTCGTGGGTTCGCGAAGGTGGACGTGCTGATCTTCGATGA 7062 Query 951 GGCGCAGCGGCTCACCGACAAGGCCATGGACGACCTGATTCCGACGATGAACACCGTCGA 1010 ||||||| ||||| || ||||||||||| ||| || ||||| | | |||| | | Sbjct 7061 GGCGCAGATCCTCACGGAGAAGGCCATGGAGGACATGGTTCCGGCAACGAACGCGGCACC 7002 Query 1011 GAAT---CCGTTGATCCTGCTCACTGGCACCCCGCCGCGGCCGACGGACTCGGGCGAAGT 1067 ||| | | || || || || ||||| || ||||| || |||||| ||||||| || Sbjct 7001 TAATGGTCTGGTGTTCATGATC---GGCACTCCCCCGCGCCCCACGGACCCGGGCGAGGT 6945 Query 1068 GTTCACGATGCTCCGGCAAGACGCTCTCGACGGCGAGTCCGAAGGCACGCTATACGTCGA 1127 |||| |||||| |||| | | || || |||||| | | | | | ||||| || Sbjct 6944 GTTCTCGATGCGCCGGGACGCGGCACTGTCGGGCGAGGACCCGGACGTGATGTACGTGGA 6885 Query 1128 GTTCTCCGCGGACGAGGGCGCGCACCCGGACGACCGGGCGCAGCTGCGCAAGGCGAACCC 1187 | | || || || ||| |||| ||||||||||||| ||| | ||| ||||||||||| Sbjct 6884 GCTGTCGGCCGATAAGGACGCGAACCCGGACGACCGTGCGGCGTGGCGGAAGGCGAACCC 6825 Query 1188 GAGCTATCCGCACCGCACCAGCGAGCGCGCGATTCGGCGTATGCGAAAGAACCT---CAC 1244 | | |||||||| || | ||| ||||||| ||| ||||| ||| || | Sbjct 6824 GTCGTTCCCGCACCGGACGGGTGAGGGCGCGATCTTGCGCATGCGGAAGCTGCTGGGGTC 6765 Query 1245 CGAAGAGTCATTTCTGCGCGAGGCGTTCGGCATCTGGGACAAG 1287 | ||||| |||| || |||| | |||||||||||| || Sbjct 6764 TGTCGAGTCGTTTCGCCGTGAGGGTCTGGGCATCTGGGACGAG 6722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133157285214520