Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq664 120 2e-22 seq350 116 2e-21 seq440 102 5e-17 seq393 100 2e-16 >seq664 Length=12074320 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||| | ||| || || ||| || || |||||||| |||| Sbjct 406621 CACCACCACGGAGACGGAGCACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 406680 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| |||| |||| ||||| ||||| |||||||| |||||||| || | | Sbjct 406681 CGAGCGTGCGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTG 406740 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| ||| | ||| ||| | ||||||| ||||| Sbjct 406741 GGATCCCTTCCTTGTCTTGGATCTTCGCTTTGA-CATTGTCGATGGTGTCGGAGGATTCG 406799 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| ||||| || ||||||||||| Sbjct 406800 ACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 406849 >seq350 Length=9129079 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | ||||| || || || || || || ||||||||||| | | Sbjct 5338505 CCTCCTCTCAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCG 5338564 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | |||| || | ||| || ||||| || |||| ||||||||||| | || Sbjct 5338565 AGTGTCCTTCCGTCTTCAAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTGGG 5338624 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| ||| |||| ||| | ||||| ||||| || Sbjct 5338625 ATCCCTTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATCGTGTCCGACGATTCAAC 5338683 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || ||||| || || ||||| ||||| |||||||||||||| Sbjct 5338684 CTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 5338731 >seq440 Length=7283533 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| || ||| ||| || || ||||||||||||| Sbjct 660929 ACCACCACGGAGACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGC 660870 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| |||| || | ||| |||||||| || ||||| | |||||| || | || Sbjct 660869 CAAGGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 660810 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| |||||||| || || | || ||| | ||| | ||||||| ||| | Sbjct 660809 GATACCCTCTTTGTCTTGGATCTT-GGCTTTAACGTTGTCAATGGTGTCGGAGCTTTCAA 660751 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || || || || || || || |||||| Sbjct 660750 CCTCCAAAGTAATGGTTTTTCCCGTCAAAGTCTTGACGAAAATTTGCATA 660701 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || ||| ||| || || ||||||||||||| Sbjct 6972962 ACCACCACGTAGACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 6973021 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| || | || |||||||| || || | | |||||| || |||| Sbjct 6973022 CAAAGTTCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGG 6973081 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| || || || ||| | || ||| | ||| | |||||| ||| || Sbjct 6973082 GATGCCTTCCTTATCCTGGATCTTC-GCTTTAACGTTGTCGATGGTGTCAGAGCT---TT 6973137 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | ||||| || || || || | || ||||| ||||||||||| Sbjct 6973138 CCACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 6973189 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| || ||| ||| || || ||||||||||||| Sbjct 661157 ACCACCACGGAGACGCAAGACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGC 661098 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | ||| |||||||| || ||||| | |||||| || | || Sbjct 661097 CAAGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGGGG 661038 Query 33642 CACACCTTCTTTGTC 33656 | ||| |||||||| Sbjct 661037 GATACCCTCTTTGTC 661023 >seq393 Length=11819561 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||| || || || ||| || || |||||||| |||| ||||||||| | Sbjct 356996 ACGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGCCC 357055 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || || ||||| || ||||| | |||||| || | || | ||||| || Sbjct 357056 GTCCTCCAGCTGCTTCCCGGCGAATATCAATCTCTGCTGGTCCGGAGGGATTCCTTCCTT 357115 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || ||| |||| ||| ||| | ||||| ||||| || || | |||| Sbjct 357116 GTCCTGGATCTTCGCCTTCA-CATTGTCGATCGTGTCCGAGGATTCGACCTCGAGGGTGA 357174 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || |||| ||||| || ||||||||||| Sbjct 357175 TTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 357211 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | |||||||||||| || || || ||| || || |||||||| |||| Sbjct 8004137 ACCACCACGAAGACGTAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGC 8004196 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | || ||||| || || || | ||||||||| || | || Sbjct 8004197 TAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGG 8004256 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | || || ||||| ||||| | || |||| ||| | |||||| ||| | Sbjct 8004257 AATGCCCTCCTTGTCCTGGATTTT-GGCTTTGACATTGTCGATGGTGTCTGAGCT---CT 8004312 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || ||||| || || || || ||||||||||||||| Sbjct 8004313 CAACCTCTAGAGTAATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCATA 8004365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701175713600