Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq497 563 3e-156 seq456 563 3e-156 seq219 563 3e-156 >seq497 Length=57642 Score = 563 bits (624), Expect = 3e-156 Identities = 706/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 || |||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 15610 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 15552 Query 28720 ATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 || | || ||||| || |||||||| || || ||||| || |||||||| || || || Sbjct 15551 TTCCGTTTTTATTATAGCTTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 15492 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| |||||| ||||||||||| || || || || ||| | | || | Sbjct 15491 ACCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 15432 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | || || ||||| || ||||||||| || |||||||| Sbjct 15431 TTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 15374 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||||| |||||||| || || | |||| | || | ||||| | |||| || | Sbjct 15373 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 15314 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||| ||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 15313 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 15254 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | |||||||| | ||| Sbjct 15253 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGT 15194 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 ||||| |||| || | |||||| | || || || || || ||||||| ||| | Sbjct 15193 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 15134 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || |||||||| ||||| ||||| |||||||| || || ||||| Sbjct 15133 GTATTCCAGGCTGAGCACAACATTCTGATGCATCCGTTTCACATGCTAGGTGTAGCTGGT 15074 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| ||||| ||||||||||| ||||| ||||| | || || || | | ||| Sbjct 15073 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 15015 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || || ||| | ||| || | ||||||| || || ||||||||||| Sbjct 15014 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGA 14955 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||||||| Sbjct 14954 AACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 14895 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| ||| |||||| |||| |||||| | || || |||||||| ||||| ||||| Sbjct 14894 TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTG 14835 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 ||| |||| || || || ||| ||||| || || || || ||||| || || ||||| Sbjct 14834 GTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 14775 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | || || || |||||||||||||||||| || | || || || Sbjct 14774 ATCAGTAGTTGATAGTCAAGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGC 14715 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||| || | ||||| |||||||| ||||||||||| |||||||| || || || || Sbjct 14714 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 14655 Query 29616 T 29616 | Sbjct 14654 T 14654 >seq456 Length=23154 Score = 563 bits (624), Expect = 3e-156 Identities = 706/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 || |||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 16583 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 16525 Query 28720 ATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 || | || ||||| || |||||||| || || ||||| || |||||||| || || || Sbjct 16524 TTCCGTTTTTATTATAGCTTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 16465 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| |||||| ||||||||||| || || || || ||| | | || | Sbjct 16464 ACCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 16405 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | || || ||||| || ||||||||| || |||||||| Sbjct 16404 TTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 16347 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||||| |||||||| || || | |||| | || | ||||| | |||| || | Sbjct 16346 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 16287 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||| ||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 16286 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 16227 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | |||||||| | ||| Sbjct 16226 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGT 16167 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 ||||| |||| || | |||||| | || || || || || ||||||| ||| | Sbjct 16166 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 16107 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || |||||||| ||||| ||||| |||||||| || || ||||| Sbjct 16106 GTATTCCAGGCTGAGCACAACATTCTGATGCATCCGTTTCACATGCTAGGTGTAGCTGGT 16047 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| ||||| ||||||||||| ||||| ||||| | || || || | | ||| Sbjct 16046 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 15988 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || || ||| | ||| || | ||||||| || || ||||||||||| Sbjct 15987 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGA 15928 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||||||| Sbjct 15927 AACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 15868 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| ||| |||||| |||| |||||| | || || |||||||| ||||| ||||| Sbjct 15867 TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTG 15808 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 ||| |||| || || || ||| ||||| || || || || ||||| || || ||||| Sbjct 15807 GTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 15748 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | || || || |||||||||||||||||| || | || || || Sbjct 15747 ATCAGTAGTTGATAGTCAAGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGC 15688 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||| || | ||||| |||||||| ||||||||||| |||||||| || || || || Sbjct 15687 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 15628 Query 29616 T 29616 | Sbjct 15627 T 15627 >seq219 Length=26726 Score = 563 bits (624), Expect = 3e-156 Identities = 706/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 || |||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 17380 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 17322 Query 28720 ATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 || | || ||||| || |||||||| || || ||||| || |||||||| || || || Sbjct 17321 TTCCGTTTTTATTATAGCTTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 17262 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| |||||| ||||||||||| || || || || ||| | | || | Sbjct 17261 ACCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 17202 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | || || ||||| || ||||||||| || |||||||| Sbjct 17201 TTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 17144 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||||| |||||||| || || | |||| | || | ||||| | |||| || | Sbjct 17143 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 17084 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||| ||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 17083 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 17024 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | |||||||| | ||| Sbjct 17023 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGT 16964 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 ||||| |||| || | |||||| | || || || || || ||||||| ||| | Sbjct 16963 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 16904 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || |||||||| ||||| ||||| |||||||| || || ||||| Sbjct 16903 GTATTCCAGGCTGAGCACAACATTCTGATGCATCCGTTTCACATGCTAGGTGTAGCTGGT 16844 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| ||||| ||||||||||| ||||| ||||| | || || || | | ||| Sbjct 16843 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 16785 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || || ||| | ||| || | ||||||| || || ||||||||||| Sbjct 16784 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGA 16725 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||||||| Sbjct 16724 AACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 16665 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| ||| |||||| |||| |||||| | || || |||||||| ||||| ||||| Sbjct 16664 TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTG 16605 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 ||| |||| || || || ||| ||||| || || || || ||||| || || ||||| Sbjct 16604 GTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 16545 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | || || || |||||||||||||||||| || | || || || Sbjct 16544 ATCAGTAGTTGATAGTCAAGGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGC 16485 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||| || | ||||| |||||||| ||||||||||| |||||||| || || || || Sbjct 16484 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 16425 Query 29616 T 29616 | Sbjct 16424 T 16424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146664372133930