Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq481 262 6e-64 >seq481 Length=6868915 Score = 262 bits (290), Expect = 6e-64 Identities = 403/563 (72%), Gaps = 15/563 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| | ||| ||||| |||||| || |||||||| || || || Sbjct 948773 TGTTCCCAATCCACTACCCACAGATCTGGGAGATGTAC-AAGAAGGCCGAAGCATCTTTC 948831 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--ACTGGGTGTCGCTGAGCG 1455870 ||||| || || || |||||||| ||| | |||||| |||||| | || | || Sbjct 948832 TGGACGGCGGAAGAAGTCGACCTAT-CGCA-AGACGGTCGCGACTGGGAGAATCTCAACG 948889 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| |||||| || |||||||| ||||||||||| ||| ||||||||| || || ||| Sbjct 948890 ACGGCGAGCGACACTTCATCAAACACGTCCTCGC-TTTCTTCGCCGCCTCAGACGGAATC 948948 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || ||||| || || | | || ||| || || ||| | | ||||| ||| Sbjct 948949 GTCCTGGAGAATCTTGCTTCCAGGTTCATGTCCGATGTACAAGTCTCGGAGGCGCGTGCT 949008 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || || || ||||||||||| ||||| ||||||||||| || | ||| ||||| || Sbjct 949009 TTCTATGGATTCCAGATCGCGATCGAGAACATCCACTCGGAGATGTACAGTCTCCTCCTC 949068 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || || ||| |||||||| |||| ||||| ||||| || || ||||| || | Sbjct 949069 GATACGTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGAGCAATCGAAACCATC 949128 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GA 1456169 || | || ||| || || | ||||| |||||||||||| || || ||| || Sbjct 949129 CCTTGCGTCGCGAAGAAAGCACAGTGGGCCATGAAGTGGATCGAC-----GGATCTCAGA 949183 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 | ||| ||||| | || ||| || ||| ||||||| || ||||| ||||| || || Sbjct 949184 C-CTTCGCCGAAAGAATCATCGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGC 949242 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAA 1456288 |||||| | ||||| ||||| |||||||| || |||||| |||| || ||| ||| Sbjct 949243 TTCTGCTCGATCTTCTGGCTGAAGAAGCGAGGGCTCATG-CCGGGATTGACCTTCTCCAA 949301 Query 1456289 CGAATTTATCAGTCGCGACGAAG 1456311 ||| || ||| ||| || |||| Sbjct 949302 CGAGTTGATCTCTCGAGATGAAG 949324 Score = 116 bits (128), Expect = 5e-20 Identities = 210/300 (70%), Gaps = 13/300 (4%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG-- 1456504 ||| || ||||| || || ||||| || ||||||||| | || | |||| ||| Sbjct 949323 AGGCTTACACTGCGATTTCGCCTGCCTTCTCTACACGCTCCTGAGGACGAAGCTCTCGGA 949382 Query 1456505 --ACCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCA 1456562 | ||| ||| ||| |||| || ||| |||||||||||||||| ||||||||| Sbjct 949383 GGAGCGA-GTG---AAGTCGATCGTCTGCGACGCCGTCGAGATCGAGAGGGAGTTTGTCT 949438 Query 1456563 GCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAA-CGCCACCGCTCATGTGCCAGTACAT 1456621 |||| |||| ||| ||| | | || ||||| || || || ||| | ||||| || Sbjct 949439 GCGACGCGCTTCCGTGCGCGTTAGTGGGGATGAACCGGGAC--CTGATGAGTCAGTATAT 949496 Query 1456622 TGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACG 1456681 | | ||||| || || | || | | |||||||| | ||| |||| |||| | | Sbjct 949497 CG-AGTTTGTGGCGGATAGGCTTTTGGGCGCGCTCGGGTACGG-GAAGGTCTACGGTGTG 949554 Query 1456682 GCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 || || ||||| ||||||||||| |||||||| |||| || || ||||| |||||| Sbjct 949555 GCGAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAGGGTAAAACAAACTTCTTCGAG 949614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177743201454210