Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq385 122 1e-22 seq320 113 6e-20 >seq385 Length=11279646 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | || | || | |||||| |||| |||||| Sbjct 380582 TCCTCCTTGATCAACATAGCGAGCAGTATCGTTGAACACCCGCAGCATTGGAACAATACC 380523 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| |||||||| ||| ||| |||||||| ||||||| || || || || Sbjct 380522 ATTAGATACTCCATTTGTGCCACGAATGTAACTTCCAGTTGCGCGGATGTTGTGAACTGA 380463 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || |||| || | |||||| |||||| ||||||||||| Sbjct 380462 AACACCAATACCACCGGCAGATTTACTTATAACAGCACACTCTTTCAAAGTGTCATATAT 380403 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||| || ||||| | ||||| ||||| Sbjct 380402 TCCCTCAATGCTATCGTCCTTCATGCAGATCAGAAAGCAGCT 380361 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| | ||| || | || |||||||| |||||||||||| | ||| | || || Sbjct 380262 AGTTCCAGAATTGAAGAGAGTGGGAGATGCATGAGTGAACCATCGCTGAGACATCAAATG 380203 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| ||||| || || ||||| || ||||| || | | || | ||| | Sbjct 380202 GTAAGTTTGGATAGCGGAATCAATATCTTCCTTGTGAATGCCAACAGAAACCCTCATGAG 380143 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| |||||||| | ||| | | ||| | | ||| || ||||||||| | || || Sbjct 380142 CATGTGCTGAGGCCTTTCAATCACTTTTCCTTGGACTTTTAAGAGGTATGATCTCTCGAG 380083 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| |||| ||| ||| || | || ||||| || Sbjct 380082 TGTTTTGAATCCAAAGTAGTCATATTCAAAATCGCGATCATAAATGAT 380035 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 |||||||||||||||||| | || || || |||||||||||||||||||| | | | || Sbjct 381865 AAGAATAAATGCATCTGCAAGACCTTGTACACCAATACCGATAGGTCTATGACGCATGTT 381806 Query 69141 TGAACTTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTT 69198 |||| ||| || ||| | |||||| | ||| | ||| || || ||||| |||||| Sbjct 381805 TGAAGTTTTGGCGGTCT-CCACAGGATAGTGATTCACATCAATTATCTTATTGAGATTT 381748 >seq320 Length=3991519 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 317408 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 317349 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||| ||| ||| || ||||| |||| || |||||| || || Sbjct 317348 ATTAGACGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACTGA 317289 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || || || || || ||| || | |||||| ||| | ||| |||||||| Sbjct 317288 AACGCCAATACCCCCAGCAGATTTGCTAATAACAGCACACTCTTTGAGTGTTTCATATAT 317229 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||||||| ||||| | ||||| ||||| Sbjct 317228 GCCCTCGATGCTATCATCTTTCATGCAGATCAGAAAGCAGCT 317187 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| ||||| || | ||||||||||| |||||||||||| | | || | || || Sbjct 317071 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGCGACATCAAATG 317012 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| || | || || || || ||||| || || || || | || || | ||| | Sbjct 317011 GTAAGTCTTGATTGCAGAATCAATATCGTCCTTGTGGATGCCAACAGCAACCCTCATTAG 316952 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| |||||||| | ||| || ||| || | ||| || ||||| ||| | || || Sbjct 316951 CATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTTAAGAGGTACGATCTCTCAAG 316892 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||| || ||||| || | ||| ||| || | ||||| || || Sbjct 316891 AGTTTTGAATCCAAAGTAATCATATTCAAAATCACGGTCGTAGATGAT 316844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902746616200