Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_027365.1 Length=58076 Score E Sequences producing significant alignments: (Bits) Value seq334 246 1e-60 >seq334 Length=7771 Score = 246 bits (272), Expect = 1e-60 Identities = 480/700 (69%), Gaps = 22/700 (3%) Strand=Plus/Minus Query 2623 GAAGCGTCCCGATGGGCTGTACGCCGCCGACATGTTCGGCATG------TCGATTCCGCG 2676 |||||| | ||||||| ||| || || | ||| ||| || |||||||| || Sbjct 7411 GAAGCGCGCGGATGGGCAGTATGCGGCGGGCATTGGTGGCGTGGTGGCGTCGATTCC-CG 7353 Query 2677 CCAGACCGGCAAGACGTACCTGCTGGGCGCGATCGTGTT-CGCGCTGTGCGTGGCGGCCG 2735 |||| ||| ||||||||| | | || || | ||||| |||| || ||| | | || Sbjct 7352 CCAGGTCGGGAAGACGTACACGATTGGTTCGCT-GTGTTTCGCGTTG-GCGATGGTGACG 7295 Query 2736 TCGACCGGCCGCTGACCGTGATCTGGACGGCGCACCGCACCCGCACGGCCGCCGAGACGT 2795 || || | ||| | || ||||||||||| || || || ||| || ||||||| Sbjct 7294 CCGG--GGTCTTTGATCTTG---TGGACGGCGCATCGGACGCGTACGCATGCGGAGACGT 7240 Query 2796 TCAAGTCGATGCAGGGCTTCGCCAAGATGCCGCGCATCGAGCCGTACATCGAGAAGGTGT 2855 | ||||||| || | || || |||| || |||||| | ||| |||| Sbjct 7239 TTGGGTCGATGGCTGGGATGGCTGAGCGGCCGTCGATTAAGCCGTTTGTGGAGTCGGTGC 7180 Query 2856 CGCTGGCGCGCGGTGAGGAAGCCGTGATCTTCACCAACGGCTCCCGAATCCTGTTCGGCG 2915 | |||| |||||| | || | | |||| ||||| || || || |||| || | Sbjct 7179 GTCGGGCGAATGGTGAGCAGGCGATCGTTTTCAAGAACGGTTCGCGCATTTTGTTTGGTG 7120 Query 2916 CGCGTGAACGCGGTTTCGGTCGTGGTTTCGCCGGTGTCGACGTGCTGATCTTCGACGAGG 2975 | || || || ||||||||||| ||||| || ||||||||||||||||| |||| Sbjct 7119 CTCGCGAGTCTGGCTTCGGTCGTGGGTTCGCGAAGGTGGACGTGCTGATCTTCGATGAGG 7060 Query 2976 CGCAGATTCTCACCGAGAACGCGATGGACGACATGGTGCCCGCGACGAACGCGGCACCTA 3035 ||||||| ||||| ||||| || ||||| |||||||| || || |||||||||||||||| Sbjct 7059 CGCAGATCCTCACGGAGAAGGCCATGGAGGACATGGTTCCGGCAACGAACGCGGCACCTA 7000 Query 3036 ACCCGCTCATCATCCTGGCCGGGACGCCGCCGAAGCCGACCGATCCCGGCGAAGTGTTCA 3095 | || | || || ||| || || ||| || || || || ||||| |||||| Sbjct 6999 ATGGTCTGGTGTTCATGATCGGCACTCCCCCGCGCCCCACGGACCCGGGCGAGGTGTTCT 6940 Query 3096 CGATGCTGCGGCACGACGCCATCACCGGCGAGGCCGACGACGTGGGTTTCGTCGAAATCT 3155 |||||| ||| ||| || | | ||||||| | |||||| | ||| || | | Sbjct 6939 CGATGCGCCGGGACGCGGCACTGTCGGGCGAGGACCCGGACGTGATGTACGTGGAGCTGT 6880 Query 3156 CGGCCGACCGGGACGCCGACCTCGATGACC--GCAGCCAGTGGCGCAAGATGAACCCGAG 3213 ||||||| |||||| ||| || |||| || || |||||| ||| ||||||| Sbjct 6879 CGGCCGATAAGGACGCGAACCCGGACGACCGTGCGGC--GTGGCGGAAGGCGAACCCGTC 6822 Query 3214 CTACCCGCACCGCACGAGCGCCCGCGCGATCCTGCGTATGCGGAAAGCACT---GTCGGA 3270 | ||||||||| ||| | | |||||||| |||| |||||||| || ||| | Sbjct 6821 GTTCCCGCACCGGACGGGTGAGGGCGCGATCTTGCGCATGCGGAAGCTGCTGGGGTCTGT 6762 Query 3271 TGACAGCTTTCGCCGCGAGGCGATGGGCATTTGGGACGAG 3310 || |||||||| |||| ||||||| ||||||||| Sbjct 6761 CGAGTCGTTTCGCCGTGAGGGTCTGGGCATCTGGGACGAG 6722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185720045161980