Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq440 118 9e-22 seq393 107 2e-18 seq664 96.9 3e-15 seq350 89.7 4e-13 >seq440 Length=7283533 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| |||| ||||| ||||| || | || || || || ||||| ||||| ||| | Sbjct 661384 CCTCCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCC 661325 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || |||||||| || |||||| | ||||||||||| || ||||| || Sbjct 661324 AAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 661265 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| |||||| || | | | || | ||||| | | || || Sbjct 661264 ATACCTTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 661205 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || ||||||| ||| || || ||||| |||||| Sbjct 661204 TCGAGAGTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATCTGCATA 661157 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||| || || || || || ||||| ||| || | || |||||||| Sbjct 6972981 ACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGACCGTCTTCG 6973040 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | || || | ||| || |||||||| | || || ||||| | Sbjct 6973041 AGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCTGG 6973100 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | | || | ||||| | | ||| || || || || || | || Sbjct 6973101 ATCTTCGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCTTT 6973160 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || || ||||| ||||| Sbjct 6973161 CCGGTGAGAGTCTTTACGAAGATCTGCAT 6973189 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| || |||| | || ||| Sbjct 661594 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCG 661535 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| || ||||| || | ||| || || || | Sbjct 661534 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGG 661475 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | | || | ||||| | | ||||| || | || |||| ||| Sbjct 661474 ATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACCTCCAACGTGATAGTCTTG 661415 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || ||||| ||||| |||||| || Sbjct 661414 CCGGTAAGTGTCTTCACGAAGATCTGCATACCT 661382 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || ||||| || || |||||||| || |||| ||| | || || Sbjct 6972297 ACCAAATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAATGT-GCGACCATCCTC 6972355 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || || ||| | ||||||||||| || ||||| || | ||| || || || Sbjct 6972356 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTG 6972415 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | | || | ||||| | | || || |||| ||| || | || Sbjct 6972416 GATCTTAGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCCACCTCTAAAGTGATGGTCTT 6972475 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || || || || || |||||| Sbjct 6972476 CCCGGTCAATGTCTTAACGAAAATCTGCATA 6972506 >seq393 Length=11819561 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || || ||||| || | ||||| || || || || ||||||||| | | |||| | Sbjct 8004150 CGTAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCA 8004209 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || || ||| | || |||||||| || ||||| || | ||||| || Sbjct 8004210 TCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTG 8004269 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| ||| | | || | ||||||| | ||||| |||||||| || Sbjct 8004270 TCCTGGATTTTGGCTTTGACATTGTCGATGGTGTCTGAGCTCTCAACCTCTAGAGTAATG 8004329 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 | || || |||| ||| ||||||||||| |||||| || Sbjct 8004330 GTCTTACCGGTCAAAGTCTTCACAAAGATCTGCATACCT 8004368 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || || ||||| || |||||||| || | || | ||||||||||| Sbjct 8005301 ATGCAAAGTCGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCGGCCATCTTCGAGCTG 8005360 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || |||||| | ||||| | ||| |||||||| || | ||| || || || |||||| Sbjct 8005361 CTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCTT 8005420 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | ||| | | | || | ||||| | | || || || || || || | || || || Sbjct 8005421 GGCTTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGT 8005480 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 ||||||||||||||||| ||||| Sbjct 8005481 GAGAGTTTTCACAAAGATCTGCAT 8005504 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| ||||| || | ||||| || || || |||||||| ||| | Sbjct 8004366 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCC 8004425 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | || || ||||| || || ||| | || | | ||| || ||||| || Sbjct 8004426 AAGGTACGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAATCTCTGCTGGTCCGGAGGG 8004485 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || |||||| || | | | || | |||||| | | ||||| Sbjct 8004486 ATACCTTCCTTGTCCTGGATCTTAGCCTTTACGTTGTCGATAGTGTCGGAGCTCTCAACC 8004545 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| |||| || || |||| ||||| || |||||||||||| Sbjct 8004546 TCCAAAGTGATAGTCTTTCCAGTCAAGGTTTTAACGAAGATTTGCATA 8004593 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| ||||||||| | | |||| | || || Sbjct 8003928 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGACCATCCTCA 8003987 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| || ||||| || | || || || || Sbjct 8003988 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGA 8004047 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | ||||| | | || || |||||||| || | || Sbjct 8004048 ATCTTGGCCTTCACGTTATCAATGGTGTCGGAGCTCTCCACCTCTAGAGTGATGGTCTTA 8004107 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || ||||| || || |||||| Sbjct 8004108 CCGGTCAAGGTCTTCACGAAAATCTGCATA 8004137 >seq664 Length=12074320 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| ||||| || | || || || || ||||| ||||| || | Sbjct 3113689 CCTCCACGTAGACGCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCC 3113748 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || || ||| | || | | ||| || ||||| || Sbjct 3113749 AAGGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGG 3113808 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||| ||| ||| | | | || | ||||| | | || ||| Sbjct 3113809 ATGCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCACT 3113868 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 |||||||| || | ||| || |||| ||| ||||||||||| |||||| || Sbjct 3113869 TCTAGAGTGATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCATACCT 3113919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| || |||| | || || Sbjct 3113479 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCA 3113538 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| || ||||| || | || || || || | Sbjct 3113539 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGG 3113598 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||| | | | || | ||||| | | || || |||||||| || | || Sbjct 3113599 ATTTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCTAGAGTGATGGTCTTA 3113658 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || |||| ||| || |||||||| |||||| || Sbjct 3113659 CCGGTCAAAGTCTTTACAAAGATCTGCATACCT 3113691 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| ||||| || | || || || || || || |||||||| | Sbjct 3113917 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGCC 3113976 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| || || ||| | || | | ||| || ||||| || Sbjct 3113977 AAAGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGG 3114036 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||| ||| ||| | | | || | ||||| | | || || Sbjct 3114037 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCACC 3114096 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 |||||||| || | ||| || |||| ||| ||||||||||| |||||| || Sbjct 3114097 TCTAGAGTGATGGTTTTCCCAGTCAAAGTCTTCACAAAGATCTGCATACCT 3114147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| ||||| || | ||||| || || || |||||||| ||| | Sbjct 3114145 CCTCCACGGAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCC 3114204 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || || ||| | || | | || || ||||| || Sbjct 3114205 AAGGTGCGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGAGGG 3114264 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| |||||| || | | || | ||||| | | ||| || Sbjct 3114265 ATGCCTTCCTTATCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCGGAGCTTTCGACC 3114324 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| |||| ||||| |||| ||||| || |||||||||||| Sbjct 3114325 TCCAAAGTGATAGTCTTGCCAGTCAAGGTTTTAACGAAGATTTGCATA 3114372 >seq350 Length=9129079 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | ||||| || | ||| || || || || || ||||| || | | Sbjct 5338505 CCTCCTCTCAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATC-CGC 5338563 Query 27081 ATGTTGCGCTC-GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | || |||||| || || || |||||| | || || ||||| |||||||| || Sbjct 5338564 GAGTGTCCTTCCGTCTTCAAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTGG 5338623 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || |||||| |||| | || | ||||| | | |||||| Sbjct 5338624 GATCCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGATTCAAC 5338683 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| | || ||||| | |||||||||||||| ||||| Sbjct 5338684 CTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 5338731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424930748883960