Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq442 143 3e-29 seq367 129 7e-25 seq413 123 3e-23 seq393 120 4e-22 seq481 100 4e-16 seq320 100 4e-16 >seq442 Length=8882589 Score = 143 bits (158), Expect = 3e-29 Identities = 202/280 (72%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| ||||||||||||||||||||| || Sbjct 3255086 AAACCCATCCATCTCAGTCAACAACTGATTAATCGTTTGTTCTCTCTCATCATTTCCT-- 3255143 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| ||||| Sbjct 3255144 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 3255203 Query 11657 CATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || |||||| || | ||||| ||||| | ||| || |||||||||| Sbjct 3255204 CAAGG--AGCTTTCGCCTTAGCCTTCTCAAACAGATCTCTAACTCTAGACGCACCCACAC 3255261 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 ||||||| | ||||||||| | | || | || || ||| || || | ||| | Sbjct 3255262 CAACAAAAAGCTCCACAAACTCAGAAGCCGCACAGGAGAAGAAAGGTACTCCAGCTTCTC 3255321 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| || | ||||||||| |||||||| || Sbjct 3255322 CAGCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGG 3255361 >seq367 Length=1810539 Score = 129 bits (142), Expect = 7e-25 Identities = 199/280 (71%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||||||||||||||| || | | |||||||| || ||||| |||||||||||| | Sbjct 1313592 AAAGCCATCCATCTCCGTCAAGAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCCA-- 1313535 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || || | | |||| | || || |||||||||||||| || || |||||| Sbjct 1313534 CCTCCCATACCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 1313475 Query 11657 CATGGTTGATTTTCGCGGGCGATTTC--AAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || || |||||| || ||| ||| | ||| | |||||| ||||| |||| Sbjct 1313474 CAAGGAGC--TTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGATGCACCAACAC 1313417 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 ||||||| | ||||||||| | | |||| ||| || |||||| || || ||| | Sbjct 1313416 CAACAAAAAGCTCCACAAACTCGGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTC 1313357 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | ||||| || | || ||||| ||||| || || Sbjct 1313356 CTGCCACGGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGG 1313317 >seq413 Length=15208799 Score = 123 bits (136), Expect = 3e-23 Identities = 298/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | |||| ||||| ||||| | | || || || Sbjct 1883644 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 1883703 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| ||||||||||| || || | |||||| Sbjct 1883704 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCCGTCAGGAGCTGATTA 1883763 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| |||||||| || |||| || | | | |||| | || Sbjct 1883764 AGCGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTTCCA 1883820 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||| | || ||||| || || |||||| ||| ||| || Sbjct 1883821 ACAGCATCTATTTCATCCACAAAAACAATGCACGGAGCATTTTCCTTGGCTTTTTTGAAA 1883880 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 ||||| || |||||| ||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 1883881 AGATCACGGACCCTTGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAG 1883940 Query 11747 CACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| | ||| || ||| | |||||| || |||||| || | ||||| || | Sbjct 1883941 --ATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTCC 1883998 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAAT 11864 | ||||| || ||| || || | ||| ||||| ||||||| || Sbjct 1883999 CAGTACCAGGAGGACCAATAAGGAGAACACCTTTCGGGATACGGGCACCAACCGCAGTGA 1884058 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | ||||| || | ||| ||||| ||||| Sbjct 1884059 ACCTCTCAGGCTTCTTCAGAAACTCCAC 1884086 >seq393 Length=11819561 Score = 120 bits (132), Expect = 4e-22 Identities = 275/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||| || || |||| || | ||| ||||| | | ||||| Sbjct 6858899 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACCACGATAATACCAGTGTTACCTTCAAAT 6858958 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | || |||||||| |||||||| || | Sbjct 6858959 CCATCCATCTCAGTTAGCAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC---A 6859015 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || |||||||| ||||| | |||||||| || Sbjct 6859016 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAA 6859075 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||||| ||| | | || |||||||| || || |||||| ||||| ||| Sbjct 6859076 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTCGAGGCACCAACACCGACA 6859135 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| ||||| | | | ||||| || ||| || ||| | |||||| || Sbjct 6859136 AACATCTCAACAAACTCAGAGCCAGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGCA 6859195 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || ||| || | || || || || ||||| || ||| || || | ||| Sbjct 6859196 ATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCTTTC 6859255 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 |||||| ||||||| || | |||||||| | ||| ||||| || || Sbjct 6859256 GGGATCCGGGCACCAACCGCAGTGAACCTCTCGGGCTTCTTCAGAAACTCAAC 6859308 >seq481 Length=6868915 Score = 100 bits (110), Expect = 4e-16 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || |||||||| || || | || || |||||| | || |||||||| || |||||| Sbjct 949325 CCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAATCCCGGCATGAGCCCTCGCTTC 949266 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||| ||| | || | |||||| ||||||||||||||||| || || || || || Sbjct 949265 TTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 949206 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | | ||||||||||| |||| | | || | ||| ||||| ||||| | Sbjct 949205 GCGATGATTCTTTCGGCGAAGGTCTGAGA---TCCGTCGATCCACTTCATGGCCCACTGT 949149 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGCT 122892 || |||||| | | || || | |||| ||| ||| Sbjct 949148 GCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCT 949113 >seq320 Length=3991519 Score = 100 bits (110), Expect = 4e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || || ||||||||||| || || | ||| ||| ||||| | || Sbjct 317082 TGAGGCCTTGGAGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGC 317023 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||| |||| | |||||||||| || ||| ||||||||| | || Sbjct 317022 GACATCAAATGGTAAGTCTTGATTGCAGAATCAATATCGTCCTTGTGGATGCCAACAGCA 316963 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| | ||||| ||| || |||| | | |||||| || | || |||| | Sbjct 316962 ACCCTCATTAGCATGTGCTGAGGCCTTTCAACAACTTTGCCATGGA--CTTTTAAGAGGT 316905 Query 112119 A-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | || ||||||| ||||||| ||||||||| || | ||| | || || Sbjct 316904 ACGATC-TCTCAAGAGTTTTGAATCCAAAGTAATCATATTCAAAATCACG 316856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026465468000