Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq367 109 7e-19 seq481 107 2e-18 seq442 100 4e-16 >seq367 Length=1810539 Score = 109 bits (120), Expect = 7e-19 Identities = 195/281 (69%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||||||||||||||| |||||||| ||||| || || ||||| | |||||||| || Sbjct 1313592 AAAGCCATCCATCTCCGTCAAGAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCCA-- 1313535 Query 14212 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | || ||| || | | |||| |||| || || ||||| ||||| || ||||| ||| Sbjct 1313534 CCTCCCATACCTGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 1313475 Query 14270 CATGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || || |||| | | || ||||| | ||| | || || ||||| |||| Sbjct 1313474 CAAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGATGCACCAACAC 1313417 Query 14328 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCAC 14387 | ||||| | ||||||||| | || || | ||| || ||| || || | ||| | Sbjct 1313416 CAACAAAAAGCTCCACAAACTCGGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTC 1313357 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | || | ||||| || | || ||||||||||| || ||| Sbjct 1313356 CTGCCACGGCTCTAGCCAAAAGCGTCTTCCCCGTTCCCGGT 1313316 >seq481 Length=6868915 Score = 107 bits (118), Expect = 2e-18 Identities = 187/268 (70%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || || || || ||||| | || || |||||| || || |||||||| || |||||| Sbjct 949325 CCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAATCCCGGCATGAGCCCTCGCTTC 949266 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||| |||||| |||| || || || ||||||||||| || || || || ||||| Sbjct 949265 TTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 949206 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || | || || |||| | || | || | ||||||||| |||||||| Sbjct 949205 GCGATGATTCTTTCGGCGAAGGTCTGAGA---TCCGTCGATCCACTTCATGGCCCACTGT 949149 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 130271 || || ||| ||| || |||| ||| | ||| ||| ||||| | | ||| | | || Sbjct 949148 GCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCTCGGAAGAGATGGTCTCTCTCTTTG 949089 Query 130272 ATGGATCTTTGATGTACTTATCTATGAG 130299 || || ||||||||| |||| | ||| Sbjct 949088 TTG--TCCTTGATGTACGTATCGAGGAG 949063 >seq442 Length=8882589 Score = 100 bits (110), Expect = 4e-16 Identities = 190/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| | ||||| || |||||||| | |||||||| | Sbjct 3255086 AAACCCATCCATCTCAGTCAACAACTGATTAATCGTTTGTTCTCTCTCATCATTTCC--T 3255143 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | ||| | || || |||||||| ||||| |||||||| || Sbjct 3255144 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 3255203 Query 14270 CATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || || || | || ||||| | ||||| ||||| ||||| ||||| Sbjct 3255204 CAAGGAGCTTTCGCCTTAGCCTTCTCAAACAGATCTCTAACTCTAGACGCACCCACACCA 3255263 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||| | ||||||||| | | || | ||| || ||| || || || ||| || Sbjct 3255264 ACAAAAAGCTCCACAAACTCAGAAGCCGCACAGGAGAAGAAAGGTACTCCAGCTTCTCCA 3255323 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | |||| || | ||||||||| ||||| || || Sbjct 3255324 GCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGG 3255361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429750039800