Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq442 123 3e-23 seq481 116 4e-21 seq413 111 2e-19 seq367 107 2e-18 seq393 105 8e-18 >seq442 Length=8882589 Score = 123 bits (136), Expect = 3e-23 Identities = 201/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| | || ||||| |||||||| | |||||||| || Sbjct 3255086 AAACCCATCCATCTCAGTCAACAACTGATTAATCGTTTGTTCTCTCTCATCATTTCCT-- 3255143 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| ||||| | | ||| ||||||| || ||||||||||||||||| || ||| Sbjct 3255144 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 3255203 Query 9731 CATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGC--CCAC 9786 || || |||||| | |||| ||| ||||| | || || || | ||| |||| Sbjct 3255204 CAAGGAGC--TTTCGCCTTAGCCTTCTCAAACAGATCTC-TA-ACTCTAGACGCACCCAC 3255259 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||| | ||||||||| | | || | ||| || ||| || || || ||| Sbjct 3255260 ACCAACAAAAAGCTCCACAAACTCAGAAGCCGCACAGGAGAAGAAAGGTACTCCAGCTTC 3255319 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || | |||| || | || |||||||||||||| || Sbjct 3255320 TCCAGCCACTGCTCTAGCCAAGAGGGTCTTACCCGTACCAGG 3255361 >seq481 Length=6868915 Score = 116 bits (128), Expect = 4e-21 Identities = 139/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 94809 |||||||| | ||||| ||||||||| | || | || | |||| || || || Sbjct 949141 AAGAAAGCACAGTGGGCCATGAAGTGGATCGACGGA---TCTCAGACCTTCGCCGAAAGA 949197 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || |||| || || || || || |||||||||||||| ||| ||||||| | || | Sbjct 949198 ATCATCGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTC 949257 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||| ||||||||||| |||||||| || | ||||||||||||| | |||||||| Sbjct 949258 TGGCTGAAGAAGCGAGGGCTCATGCCGGGATTGACCTTCTCCAACGAGTTGATCTCTCGA 949317 Query 94930 GACGAGGG 94937 || || || Sbjct 949318 GATGAAGG 949325 >seq413 Length=15208799 Score = 111 bits (122), Expect = 2e-19 Identities = 301/455 (66%), Gaps = 12/455 (3%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | ||| ||||| ||||| | | || || || Sbjct 1883644 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 1883703 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 1883704 GCAACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCCGTCAGGAGCTGATTA 1883763 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || |||| || | | | |||| |||| Sbjct 1883764 AGCGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGCCTTCCA 1883820 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||| | || || ||||| || |||||| || || || Sbjct 1883821 ACAGCATCTATTTCATCCACAAAAACAATGCACGGAGCATTTTCCTTGGCTTTTTTGAAA 1883880 Query 9761 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 ||||| || || |||| || || ||||| ||||||||||| ||||| | | | | Sbjct 1883881 AGATCACG--GACCCTTGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG 1883938 Query 9819 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | || | | |||||| ||| || |||||| ||||||||| || | || || || Sbjct 1883939 -AGATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTC 1883997 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 9937 || ||||| || ||| ||||| ||||| || || ||| ||| || | Sbjct 1883998 CCAGTACCAGGAGGACCAATAAGGAGAACACCTTTCGGGATACGGGCACCAACCGCAGTG 1884057 Query 9938 TATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | |||||||| | ||| ||||| ||||| | ||| Sbjct 1884058 AACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 1884092 >seq367 Length=1810539 Score = 107 bits (118), Expect = 2e-18 Identities = 221/321 (69%), Gaps = 12/321 (4%) Strand=Plus/Minus Query 9574 ATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAA 9633 ||| ||||| || | ||||| || ||| | | | | ||| ||||||||||| ||||| Sbjct 1313631 ATTGGTCGCAGCCAAGACAATAACACCGGAGTTACCAGAAAAGCCATCCATCTCCGTCAA 1313572 Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC--ACCAGCACTGCGT 9691 || || ||||| || ||||||| |||||||| | | | || ||| || | | | Sbjct 1313571 GAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCC--ACCTCCCATACCTGCTCCTCTT 1313514 Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 9751 ||| | || || |||||||||||||| || || || || || || |||||| || Sbjct 1313513 TGCCTACCAACAGCATCAATCTCATCTATAAAAACAATACAAGG--AGCTTTCGCTTTCG 1313456 Query 9752 ACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAA 9807 || ||||| | ||||| || || || | || || ||||||||||| | ||||||||| Sbjct 1313455 CCTTCTCAAACAAATCCC-TA-ACCCTAGATGCACCAACACCAACAAAAAGCTCCACAAA 1313398 Query 9808 GTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9867 | | || | ||| || ||| || || | ||| || || | ||||| || | Sbjct 1313397 CTCGGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTCCTGCCACGGCTCTAGCCAA 1313338 Query 9868 AAGAGTCTTACCCGTACCTGG 9888 ||| ||||| ||||| || || Sbjct 1313337 AAGCGTCTTCCCCGTTCCCGG 1313317 >seq393 Length=11819561 Score = 105 bits (116), Expect = 8e-18 Identities = 280/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | ||| || || || | || | |||||| || | | ||||| Sbjct 6858899 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACCACGATAATACCAGTGTTACCTTCAAAT 6858958 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | || || || | ||| ||||| | ||||||||| || | Sbjct 6858959 CCATCCATCTCAGTTAGCAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCT---CCA 6859015 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | |||| | || || |||||||| ||||| | ||||| ||||| Sbjct 6859016 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGCAA 6859075 Query 9734 GGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||||| || ||| ||| ||||| || || | | ||| || ||||| || Sbjct 6859076 GGAGCGTTTTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTCGAGGCACCAACACCGAC 6859134 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | | || | || ||| || ||| || |||||| | Sbjct 6859135 AAACATCTCAACAAACTCAGAGCCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAG 6859193 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| ||| || | ||| || || || ||||| || ||| ||||| ||||| Sbjct 6859194 CAATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCTT 6859253 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 || ||| ||| ||| || | | ||||| || | ||| ||||| || || | || Sbjct 6859254 TCGGGATCCGGGCACCAACCGCAGTGAACCTCTCGGGCTTCTTCAGAAACTCAACGACTT 6859313 Query 9972 C 9972 | Sbjct 6859314 C 6859314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255660014200