Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq481 138 1e-27 seq385 95.1 1e-14 seq544 91.5 2e-13 seq413 89.7 6e-13 seq420 86.0 7e-12 seq393 86.0 7e-12 >seq481 Length=6868915 Score = 138 bits (152), Expect = 1e-27 Identities = 511/776 (66%), Gaps = 30/776 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 |||||||| || | ||| || || ||||| || || || | | |||||| ||||||| Sbjct 949631 TAATCACCAACTCTCTTCTCGAAGAAGTTTGTTTTACCCTGAAGCGAGATTAACTCCATC 949572 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 || || || || ||| ||||||| | |||| | ||| | | ||| || Sbjct 949571 CAATCAAACGGATTCGCCACACCGTAGAC---CTTCCCGTACCCGAGCGCGCCCAAAAGC 949515 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTC-TCCCGCATCCATGCCGATGAGTTT 74638 | |||||||||||| | || ||||| |||| ||||| || || || | | Sbjct 949514 CTATCCGCCACAAACTCGATATACTGACTCATCAGGTCCCGGTTC-ATCCCCACTAACGC 949456 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698 |||||| || || ||| || |||||| ||||| | |||| || ||| ||| Sbjct 949455 GCACGGAAGCGCGTCGCAGACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATCGA 949396 Query 74699 GTGAA-TGTCTT-TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 | | | || | || || || ||||||| | | ||| || | || ||| || Sbjct 949395 CTTCACTCGCTCCTCCGAGAGC--TTCGTCCTCAGGAGCGTGTAGAGAAGGCA-GGCGAA 949339 Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815 || || |||||||||||| ||||| || || || || | | || ||||| Sbjct 949338 ATCGCAGTGTAAGCCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAATCCCGGCAT 949279 Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875 || || |||||||||| ||| ||||| | |||||| ||| ||||||||| ||||| Sbjct 949278 GAGCCCTCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTC 949219 Query 74876 GACACACGCAAAGGCGACAAGGCGTTGCGCGAACG-GTG-CATCGGAAGTCATCCAAGTC 74933 ||| || || || |||| | | || ||||| | || ||| | | ||||| || Sbjct 949218 GACGCAGGCGAAAGCGATGATTCTTTCGGCGAAGGTCTGAGATCCGTCG--ATCCACTTC 949161 Query 74934 TGAGCCCATTCAGCTT--TTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGC 74991 ||||| | |||| |||| ||| ||||| || ||||| ||| |||||| | Sbjct 949160 ATGGCCCACTGTGCTTTCTTCG--CGACGCAAGGGATGGTTTCGATTGCTCGGAAGA-GA 949104 Query 74992 TTGCCT-TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAA 75050 | | || |||||| | ||||||| | | | || | | || |||| ||||||| Sbjct 949103 TGGTCTCTCTCTTTGTTGTCCTTGATGTACGTATCGAGGAGGAGACTGTACATCTCCGAG 949044 Query 75051 TGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTAC 75109 || || |||| | ||| |||| | | ||||||| |||||||| | | ||||| Sbjct 949043 TGGATGTTCTCGAT-CGCGATCTGGAATCCATAGAAAGCACGCGCCTCCGAGACTTGTAC 948985 Query 75110 ATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAA 75167 ||| || || | | | | | |||||||| |||||| ||||| ||||||||||| Sbjct 948984 ATCGGACATG-AACCTGGAAG-CAAGATTCTCCAGGACGATTCCGTCTGAGGCGGCGAAG 948927 Query 75168 AAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATC 75223 ||||| || || |||||| ||||| ||||| |||| |||| || ||||| || Sbjct 948926 AAAGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGATTCTCCCAGTC 948871 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4132500 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4132559 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4132560 TGAGCTATGAAAGC 4132573 >seq385 Length=11279646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| |||||||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 1989975 AGAATGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 1990034 Query 79680 CAATTGAGCTACGAAAGCA 79698 ||| |||||||||| |||| Sbjct 1990035 CAACTGAGCTACGAGAGCA 1990053 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3178491 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3178432 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3178431 TGAGCTATGAAAGC 3178418 >seq544 Length=10977244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/79 (87%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 |||| |||||||| |||| |||| |||| ||||||||||||||||||||||||||| | Sbjct 2373451 CAGA-TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 2373509 Query 79679 CCAATTGAGCTACGAAAGC 79697 |||| |||||||||| ||| Sbjct 2373510 CCAACTGAGCTACGAGAGC 2373528 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 485786 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 485727 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 485726 TGAGCTATGAAAGC 485713 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 485956 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 485897 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 485896 TGAGCTATGAAAGC 485883 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 486144 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 486085 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 486084 TGAGCTATGAAAGC 486071 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2104661 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2104720 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2104721 TGAGCTATGAAAGC 2104734 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3460677 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3460618 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 3460617 TGAGCTACGAGAGC 3460604 >seq413 Length=15208799 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 6506136 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6506077 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 6506076 TGAGCTACGAGAGC 6506063 >seq420 Length=6996948 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||| Sbjct 1463162 GAATGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 1463221 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 1463222 AACTGAGCTACGAGAGC 1463238 >seq393 Length=11819561 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 5173065 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5173006 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 5173005 TGAGCTATGAAAGC 5172992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211177659000