Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq664 122 5e-23 seq393 116 2e-21 seq440 113 3e-20 seq350 111 1e-19 >seq664 Length=12074320 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || || || ||||| |||||||| ||||| | | || || Sbjct 3113698 AGACGCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGA 3113757 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || || | ||| |||||||| || | || ||| Sbjct 3113758 CCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCC 3113817 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| ||| | ||| ||||| |||||||||||| | || Sbjct 3113818 TTGTCTTGGAT-TTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCACTTCTAGAGT 3113876 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || || |||||||| |||||||| Sbjct 3113877 GATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCAT 3113915 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| |||||||| || || | || ||||| |||||||||| || Sbjct 3114396 ATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTTCGGCCGTCTTCAAGCTG 3114455 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || || | ||| |||||||| || | |||||||||||| ||| | Sbjct 3114456 CTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCT-TGAATCT 3114514 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | ||| ||| | ||| ||||| ||| || || |||| || || || || || | Sbjct 3114515 TAGCTTTGACGTTGTCAATGGTGTCGGAGCTTTCAACCTCCAAAGTAATGGTCTTTCCAG 3114574 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| || |||||||||||||| Sbjct 3114575 TCAACGTCTTAACAAAAATCTGCAT 3114599 >seq393 Length=11819561 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| |||||||| || || || |||||| || ||||| || || | Sbjct 8004138 CCACCACGAAGACGTAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCT 8004197 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||| || || || || || |||| |||||| |||||||| || Sbjct 8004198 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGA 8004257 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||| | ||| || | || |||||| |||||| || Sbjct 8004258 ATGCCCTCCTTGTCCTGGAT-TTTGGCTTTGACATTGTCGATGGTGTCTGAGCTCTCAAC 8004316 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || |||||||| || || |||||||| |||||||| Sbjct 8004317 CTCTAGAGTAATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 8004364 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| |||||| |||||||| || || | || ||||| | |||||||| || Sbjct 8004617 ATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTTCGGCCATCTTCAAGCTG 8004676 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || || | ||| |||||||| || | ||||||||||| ||| | Sbjct 8004677 CTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTC-CTGAATCT 8004735 Query 34623 TTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || ||| || ||| ||||| |||||| || |||| || || || || || | Sbjct 8004736 TAGCCTTGACGTTATCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTTTCCCG 8004795 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| || ||||| |||||||| Sbjct 8004796 TCAACGTCTTAACAAAGATCTGCAT 8004820 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||| |||||||| || || | | || || Sbjct 8003919 AGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGA 8003978 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || | |||||| |||||||| || | || ||| Sbjct 8003979 CCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCC 8004038 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||||| | || ||| || ||| ||||| ||||||||| || | || Sbjct 8004039 TTGTCTTGAATCTTG-GCCTTCACGTTATCAATGGTGTCGGAGCTCTCCACCTCTAGAGT 8004097 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || |||||||| || || ||||| ||||||||||| Sbjct 8004098 GATGGTCTTACCGGTCAAGGTCTTCACGAAAATCTGCAT 8004136 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| || || | | || || | || ||||| || || ||||| || Sbjct 8004857 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAA 8004916 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| |||||||| || | ||||||||||| |||| || | || ||| Sbjct 8004917 GATCAATCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATC-TTAGCCTTGACGT 8004975 Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| ||||| |||||| || |||| || || || || ||||| || || || | Sbjct 8004976 TATCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTTTCCGGTCAATGTCTTGA 8005035 Query 34694 CAAAAATCTGCAT 34706 |||| |||||||| Sbjct 8005036 CAAAGATCTGCAT 8005048 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| || || | | || || | |||||||| || || ||||| || Sbjct 8005085 CTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCGGCCATCTTCAAGCTGCTTTCCGGCGAA 8005144 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| |||||||| || | ||||||||||| |||| || | || ||| Sbjct 8005145 GATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATC-TTAGCCTTTACGT 8005203 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || ||||| |||||| || |||| || ||||| || ||||| | || || | Sbjct 8005204 TGTCGATGGTGTCGGAGCTCTCAACCTCCAAAGTAATCGTCTTTCCGGTCAGGGTCTTAA 8005263 Query 34694 CAAAAATCTGCAT 34706 |||| |||||||| Sbjct 8005264 CAAAGATCTGCAT 8005276 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| || || | | || || | ||||| || || || ||||| || Sbjct 8005313 CTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCGGCCATCTTCGAGCTGCTTTCCGGCGAA 8005372 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| || ||||| || | || |||||||| |||||| | ||||||| Sbjct 8005373 GATGAGCCTCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCTTG-GCTTTAACGT 8005431 Query 34635 TAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || ||||| ||||||||| || | ||| || || || ||||| | ||||||| Sbjct 8005432 TGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCA 8005491 Query 34694 CAAAAATCTGCAT 34706 |||| |||||||| Sbjct 8005492 CAAAGATCTGCAT 8005504 >seq440 Length=7283533 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||| || ||||| || || | | || || Sbjct 661831 AGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGA 661772 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| ||||| || || | || ||| Sbjct 661771 CCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCC 661712 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| | || ||| || ||||||||| |||||||| || | ||| Sbjct 661711 TTGTCTTGGATCTTG-GCCTTCACGTTATCAATTGTGTCGGAACTCTCCACCTCGAGGGT 661653 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| |||||||| || || ||||| ||||||||||| Sbjct 661652 TATCGTCTTACCGGTCAAGGTCTTCACGAAAATCTGCAT 661614 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || ||| || || ||||| || || | | ||| || | || ||| Sbjct 6972069 ACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCA 6972128 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || | |||||| |||||||| || | || |||||||| | Sbjct 6972129 AGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGG 6972188 Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||||| | |||||| | ||| ||||| |||||||||||||| ||| || || || Sbjct 6972189 ATCTTG-GCCTTAACGTTGTCAATGGTGTCGGAGCTCTCCACTTCCAAGGTGATGGTCTT 6972247 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || ||||| || || ||||||||| Sbjct 6972248 CCCGGTCAATGTTTTGACGAAGATCTGCATG 6972278 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||||||||| || ||| || || ||||| || || | Sbjct 6972278 GCCACCACGAAGACGGAGGACCAAATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGC 6972337 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | || || || || || || || || || | |||||| |||||||| || Sbjct 6972338 CAATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 6972397 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || |||||||| |||| || | |||||| | ||| ||||| |||||||| Sbjct 6972398 GATACCTTCCTTGTCCTGGATC-TTAGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCCA 6972456 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || ||||| || || || || ||||||||||| Sbjct 6972457 CCTCTAAAGTGATGGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 6972505 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| ||| |||||| || ||||| ||||| | | ||||| Sbjct 6972972 AGACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGA 6973031 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || || ||||| || || | | ||| ||||||||||| | || ||| Sbjct 6973032 CCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCC 6973091 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | ||||||| | || ||||| ||| ||||| || | ||| Sbjct 6973092 TTATCCTGGATC-TTCGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGT 6973150 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || || |||||||| Sbjct 6973151 GATTGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 6973189 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | || ||||| ||||||| ||||| || |||||||| Sbjct 660665 CTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCGGCCGTCTTCGAGTTGCTTTCCGGCAAA 660606 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| |||||||| || | |||||||||||| ||| || | || ||| Sbjct 660605 GATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCT-TGAATCTTGGCCTTGACGT 660547 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || ||||| |||||||| || | ||| || || || ||||| | || || | Sbjct 660546 TGTCGATGGTGTCAGAACTCTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTAA 660487 Query 34694 CAAAAATCTGCAT 34706 | || |||||||| Sbjct 660486 CGAAGATCTGCAT 660474 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || || || |||||| |||||||| ||||| | | || || Sbjct 661375 AGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGA 661316 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| |||||||| || | || ||| Sbjct 661315 CCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCC 661256 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| |||| || ||| | || ||||| |||||| || || | || Sbjct 661255 TTATCCTGGATC-TTTGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGT 661197 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || || || |||||||| Sbjct 661196 AATGGTCTTTCCCGTCAAAGTCTTAACGAAGATCTGCAT 661158 >seq350 Length=9129079 Score = 111 bits (122), Expect = 1e-19 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || || || ||||| || ||||| ||||| | Sbjct 5338505 CCTCCTCTCAGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCG 5338564 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | ||||||||||||| || ||||| ||||| | ||||| || ||||| || Sbjct 5338565 AGTGTCCTTCCGTCTTCAAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTGGG 5338624 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTT-CGCTCTCCA 34657 | || |||||||| |||||| | || || | || ||||| || | || | Sbjct 5338625 ATCCCTTCCTTGTCCTGGATCTTC-GCCTTCACATTGTCGATCGTGTCCGACGAT-TCAA 5338682 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | ||||||||| || || ||||| ||||||||||| |||||||| || Sbjct 5338683 CCTCTAGGGTTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 5338734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726895784265