Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_028861.1 Length=44576 Score E Sequences producing significant alignments: (Bits) Value seq334 187 7e-43 >seq334 Length=7771 Score = 187 bits (206), Expect = 7e-43 Identities = 296/424 (70%), Gaps = 3/424 (1%) Strand=Plus/Minus Query 859 GAACGGCTCGCGCATCCTGTTCGGCGCGCGGGAACATGGGTTCGGGCTGGGATTCGCCGG 918 |||||| |||||||| |||| || || || || ||| ||||| | || ||||| Sbjct 7145 GAACGGTTCGCGCATTTTGTTTGGTGCTCGCGAGTCTGGCTTCGGTCGTGGGTTCGCGAA 7086 Query 919 CGTTGGCGTCCTGGTGCTCGACGAGGCGCAGCGCGTCACGAATCAGGCCATGGACGACCT 978 || | ||| ||| | |||| ||||||||| | ||||| | |||||||||| ||| | Sbjct 7085 GGTGGACGTGCTGATCTTCGATGAGGCGCAGATCCTCACGGAGAAGGCCATGGAGGACAT 7026 Query 979 GATTCCGACGATGAACACCGTCGCGAACCCGCTGATCCTGATGACGGGCACCCCGCCGCG 1038 | ||||| | | |||| | | | || ||| | | |||| ||||| || ||||| Sbjct 7025 GGTTCCGGCAACGAACGCGGCACCTAATGGTCTGGTGTTCATGATCGGCACTCCCCCGCG 6966 Query 1039 GCCGACGGACAGCGGCGAAGTGTTCGCGATGCTGCGGCAGGACGCGCTGGACGGCGAGGC 1098 || |||||| ||||| |||||| |||||| ||| | | || ||| ||||||| Sbjct 6965 CCCCACGGACCCGGGCGAGGTGTTCTCGATGCGCCGGGACGCGGCACTGTCGGGCGAGGA 6906 Query 1099 CGAAGGCACGCTGTACGTCGAGTTCTCCGCGGACGAGGGCGCCGACCCCGACGACCGGGC 1158 | | | | ||||||| ||| | || || || ||| ||| |||| |||||||| || Sbjct 6905 CCCGGACGTGATGTACGTGGAGCTGTCGGCCGATAAGGACGCGAACCCGGACGACCGTGC 6846 Query 1159 CCAACTGCGGAAGGCGAACCCGTCGTATCCGCACCGCACCGGCGAACGCGCGATCCGGCG 1218 |||||||||||||||||||| |||||||| || || || |||||||| ||| Sbjct 6845 GGCGTGGCGGAAGGCGAACCCGTCGTTCCCGCACCGGACGGGTGAGGGCGCGATCTTGCG 6786 Query 1219 TATGCGGAAGAACCT---CACCGAAGAGTCGTTCCTGCGCGAGGCGCTGGGGATCTGGGA 1275 ||||||||| || | | |||||||| | || |||| ||||| |||||||| Sbjct 6785 CATGCGGAAGCTGCTGGGGTCTGTCGAGTCGTTTCGCCGTGAGGGTCTGGGCATCTGGGA 6726 Query 1276 CAAG 1279 | || Sbjct 6725 CGAG 6722 Score = 183 bits (202), Expect = 9e-42 Identities = 209/278 (75%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 7372 GCCGAGTTCGTGGGTGAGGGACAGGCGAAGTCGTCCACCACCGGCGAGTTCGACTTTGTG 7431 ||||||||||||| ||||| ||| |||||||||| || | ||||| || ||| Sbjct 3790 GCCGAGTTCGTGGAGGAGGGCGCTAACAAGGCGTCCACCACTGGTGCGTTCGGCTCCGTG 3731 Query 7432 ACCTCCACGCCGAAGAAGGCGCAGGTCACGATGCGGTTCAACGAGGAAGTTCAGTGGGCC 7491 ||| | | ||| ||||| |||||||| ||||| |||||| |||| || ||||||||| Sbjct 3730 ACCGCTAAGCCTCGCAAGGCTCAGGTCACCATGCGCTTCAACCAGGAGGTCCAGTGGGCC 3671 Query 7492 GACGAGGACTACCAGCTTGGCGTCCTC-CGCACGCTGTCCGAGGCTGGCAGCGAGGCGCT 7550 || |||||||||||||| ||||||| |||| ||||||| || || |||||| || Sbjct 3670 GATGAGGACTACCAGCTGAACGTCCTCTCGCA-GCTGTCCCAGAAGGGTTCCGAGGCCCT 3612 Query 7551 GGCGCGCGCGCTGGATCTGGGTCTGTACCACCGGATCAACCCGCTGACCGGCGGCGTGAT 7610 | | ||||| || || || || ||||||||||| ||| | || ||| |||| || || Sbjct 3611 GTCTCGCGCTCTCGACCTCGGCCTGTACCACCGCATCCAGCCTTCGACGGGCGCTGTCAT 3552 Query 7611 CGCCGGCTGGGCGAACTACCTCAACGCGACCACGAAGC 7648 | |||| |||| |||||||| | ||||| |||||| Sbjct 3551 CACCGGGTGGGACAACTACCTGACTGCGACTTCGAAGC 3514 Score = 158 bits (174), Expect = 3e-34 Identities = 139/171 (81%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 7922 TCGTGGGCGACTTCCGCGACGGCATCCGCTGGGGCGTCCAGCGGGAAATCCCCGTCGAGC 7981 |||| ||||||||| | ||||||| ||||||||| | |||||| | | ||||| |||| Sbjct 3213 TCGTTGGCGACTTCACCAACGGCATTCGCTGGGGCATTCAGCGGAACCTGCCCGTTGAGC 3154 Query 7982 TGATCAAGTACGGCGACCCGGACGGACAGGGCGACCTGAAGCGGTTCAACCAGGTCGCTC 8041 |||||| ||||||||||||||||| |||||||||||| || |||||| |||| | Sbjct 3153 TGATCACCTACGGCGACCCGGACGGGCAGGGCGACCTGCGCCGCAAGAACCAGATCGCCC 3094 Query 8042 TGCGGCTGGAAATCGTCTACGGCTGGTACGTGTTCCTGGACTCG-TTCGTC 8091 |||| ||||| ||||||| |||||||||||| ||| ||| ||| |||||| Sbjct 3093 TGCGACTGGAGATCGTCTTCGGCTGGTACGTCTTCACGGA-TCGCTTCGTC 3044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142520406826980