Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_028889.1 Length=59416 Score E Sequences producing significant alignments: (Bits) Value seq117 230 9e-56 >seq117 Length=8551 Score = 230 bits (254), Expect = 9e-56 Identities = 528/781 (68%), Gaps = 52/781 (7%) Strand=Plus/Plus Query 47863 CGTCGACGCCGTGGTTTGCGACCCGCCCTACGAGCTGGCCTTCATGGGCAAGAAGTGGGA 47922 ||| ||||| | || |||||||||||||| || | ||||||||||||||| ||||| Sbjct 7710 CGTTGACGCAATCGTCACCGACCCGCCCTACGGCCTCGGCTTCATGGGCAAGAAATGGGA 7769 Query 47923 CGGCTCGGGTATCGCCTTCGATGTCGAGATGTG--GGAGCAATGCCTGCGGGCCCTCAAA 47980 |||| | | || || || || ||| | | ||| ||| |||| ||||| Sbjct 7770 CGGCC----TTCCCCCGTCACTG--GA-ATGGGCCGAAGCG-TGCTACCGGGTACTCAAG 7821 Query 47981 CCTGGCGGGCACCTGCTCGCGTTCGGTGGCTCGCGTACCTGGCATCGGCTGGCTGTGGCA 48040 || || || ||| | ||| ||||||||| | || |||||||| || || || || || Sbjct 7822 CCCGGTGGACACATCGCCGCTTTCGGTGGCACCCGCACCTGGCACCGCCTCGCCGTCGCC 7881 Query 48041 ATCGAGGACGCGGGCTTCGAGATTCGTGACTCTATCGCGTGGCTGTACGGCAGTGGTTTC 48100 ||||| ||||| || ||||| || || ||||| |||| ||||| ||||| || ||| Sbjct 7882 ATCGAAGACGCAGGATTCGAAATGCGCGACTCCCTCGCCTGGCTATACGGGTCAGGATTC 7941 Query 48101 CCGAAGTCGCTCGACGTATCCAAGGCCATTGACAAGGCAGGCGGCAATCCGTTGGCATTC 48160 |||||||| | ||||| ||||| || ||| |||| |||||| || || || Sbjct 7942 CCGAAGTCCTTGGACGTGGGGAAGGCAATCGAC-AGGCCAACGGCAACCCTGCCGC-TTT 7999 Query 48161 CGACGATTCGCTAAAGCGTACGCCGATGCGATCGACGCGTCGCCGTTGACGCATTCCGAT 48220 ||| ||||| || || |||| || |||||| | ||| |||| || |||| Sbjct 8000 CGAGAGTTCGCCCGCGCCTATGCCGCCGCCATCGACTCTGGCCCGATGACCCACGCCGAC 8059 Query 48221 ATTGATCGGGCGTTGGGTATCAAGGCGTCTTCGTGCTACTGGGCGAGACAGGACCATCGT 48280 |||| || | |||| |||||| ||||||| ||||||||||| | | ||||| || Sbjct 8060 GTTGACAGGAAGCTGGGGATCAAGTCGTCTTCCTGCTACTGGGCACGCGAAGACCAGCGG 8119 Query 48281 GGCGGCTTACCGCCCCGTCATCACTGGGAATCAGTTTGCGCCCTCATCGACATCCCTGCC 48340 |||||| | |||||||| |||||||||||| | || || ||| | ||| | || || Sbjct 8120 GGCGGCATGCCGCCCCGCCATCACTGGGAAGCCGTCCAAGCGCTCCTGGACTTGCC--CC 8177 Query 48341 GAACTC-GTTGAACTGTACGAAGAGGCCGAGCGGACA---GACCGC--GAAGTCACCGGG 48394 || | | | | || || || |||||||||||| | | | || ||| | |||| Sbjct 8178 GAGCGCTGGCGGGCTCTATGACGAGGCCGAGCGGGAAGTGGTCGGCATCAAGACTGCGGG 8237 Query 48395 TAT----------GGGGACAACGA---------GGTGTTCAGCGCAA---CCAGACATGT 48432 || || |||| ||| |||| | ||| || | || Sbjct 8238 CATCGCCACGCCGGGAGACAGCGACCGGCACACGGTGGGAGGGTCAAAGGCCGTTGAGGT 8297 Query 48433 CCTGAA-TC-CTGGTACCCCGGTCACTGAGGCGGCGCAGCAGTGGGAGGGCTGGGGGACG 48490 | ||| || | | || || ||||||| || ||||||||| |||||||| ||| Sbjct 8298 C--GAAGTCACCGCCCCCGCGACTCCTGAGGCCGC---GCAGTGGGACGGCTGGGGCACG 8352 Query 48491 GCTCTGAAGCCCGCGTTTGAGCCGATTGTGGTGGCGCGTAAGCCTCTCGC---GGGCACG 48547 ||||| ||||||||||||||||| || ||| | || |||||||| ||||| | || Sbjct 8353 GCTCTAAAGCCCGCGTTTGAGCCTATCGTGCTCGCCCGTAAGCCCCTCGCCGAGAAGACC 8412 Query 48548 GTCGCGGCGAACGTGCTGGAGCACGGCACCGGGGCACTCAACATCGACGCCTGCCGCATC 48607 || || |||||| || | | | || ||||| ||| ||||| | ||||| ||| | ||| Sbjct 8413 GTTGCTAGGAACGTCCTCGCGTATGGGACCGGAGCAATCAACGTGGACGCGTGCAGGATC 8472 Query 48608 G 48608 | Sbjct 8473 G 8473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190008009263380