Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_028922.1 Length=45161 Score E Sequences producing significant alignments: (Bits) Value seq334 196 1e-45 >seq334 Length=7771 Score = 196 bits (216), Expect = 1e-45 Identities = 300/425 (71%), Gaps = 7/425 (2%) Strand=Plus/Minus Query 1354 AACGGCTCGCGCATCCTGTTCGGCGCGCGGGAACACGGGTTCGGTCTGGGGTTCGCCGGC 1413 ||||| |||||||| |||| || || || || || ||||||| |||||||| Sbjct 7144 AACGGTTCGCGCATTTTGTTTGGTGCTCGCGAGTCTGGCTTCGGTCGTGGGTTCGCGAAG 7085 Query 1414 GTCGGCGTCCTGGTGCTCGACGAGGCGCAGCGCGTCACCGAACAGGCGATGGACGACCTC 1473 || | ||| ||| | |||| ||||||||| | |||| || |||| ||||| ||| | Sbjct 7084 GTGGACGTGCTGATCTTCGATGAGGCGCAGATCCTCACGGAGAAGGCCATGGAGGACATG 7025 Query 1474 ATTCCGACGATGAACACGGTCGCGAACCCGCTGATCCTGATGACGGGCACCCCGCCGCGG 1533 ||||| | | |||| ||| | || ||| | | |||| ||||| || ||||| Sbjct 7024 GTTCCGGCAACGAACGCGGCACCTAATGGTCTGGTGTTCATGATCGGCACTCCCCCGCGC 6965 Query 1534 CCGACGGATCACGGCGAAGTGTTCGCGCGGCACCGGCAGGAAGCACTGGACGGCGAGG-- 1591 || ||||| | ||||| |||||| || || |||| | | |||||| ||||||| Sbjct 6964 CCCACGGACCCGGGCGAGGTGTTCTCGATGCGCCGGGACGCGGCACTGTCGGGCGAGGAC 6905 Query 1592 CCGAAGGGTCGCTGTACGTCGAGTTCTCCGCGGACGACGGCGCCGACCCCGACGACCGGG 1651 ||| | | | ||||||| ||| | || || || | | ||| |||| |||||||| | Sbjct 6904 CCGGACGT--GATGTACGTGGAGCTGTCGGCCGATAAGGACGCGAACCCGGACGACCGTG 6847 Query 1652 CGCAACTGCGGAAGGCGAACCCGTCGTATCCGCACCGGACCGGCGAACGCGCGATCCGGC 1711 || |||||||||||||||||||| ||||||||||| || || |||||||| || Sbjct 6846 CGGCGTGGCGGAAGGCGAACCCGTCGTTCCCGCACCGGACGGGTGAGGGCGCGATCTTGC 6787 Query 1712 GCATGAGGAAGAACCT---CACCGAAGAGTCGTTCCTACGTGAGGCGCTGGGCATCTGGG 1768 ||||| ||||| || | | |||||||| | ||||||| ||||||||||||| Sbjct 6786 GCATGCGGAAGCTGCTGGGGTCTGTCGAGTCGTTTCGCCGTGAGGGTCTGGGCATCTGGG 6727 Query 1769 ACAAG 1773 || || Sbjct 6726 ACGAG 6722 Score = 187 bits (206), Expect = 7e-43 Identities = 212/280 (76%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 7879 GCTGAGTTCGTGGGTGAGGGACAGGCGAAGTCGAGCACCACGGGTGAGTTCGACTTTGTG 7938 || |||||||||| ||||| ||| || |||||| |||| ||||| || ||| Sbjct 3790 GCCGAGTTCGTGGAGGAGGGCGCTAACAAGGCGTCCACCACTGGTGCGTTCGGCTCCGTG 3731 Query 7939 ACCTCCACGCCGAAGAAGGCGCAGGTCACGATGCGGTTCAACGAGGAGGTCCAGTGGGCC 7998 ||| | | ||| ||||| |||||||| ||||| |||||| ||||||||||||||||| Sbjct 3730 ACCGCTAAGCCTCGCAAGGCTCAGGTCACCATGCGCTTCAACCAGGAGGTCCAGTGGGCC 3671 Query 7999 GACGAGGACTACCAGCTTGGCGTGCT-GCGCACGCTGTCC--GAAGCTGGCAGTGAGGCG 8055 || |||||||||||||| ||| || |||| ||||||| |||| || ||||| Sbjct 3670 GATGAGGACTACCAGCTGAACGTCCTCTCGCA-GCTGTCCCAGAAG--GGTTCCGAGGCC 3614 Query 8056 CTGGCGCGCGCTCTGGACCTGGGCCTGTACCACCGGATCAACCCGCTGACCGGCGGCGTG 8115 ||| | |||||||| ||||| |||||||||||||| ||| | || ||| |||| || Sbjct 3613 CTGTCTCGCGCTCTCGACCTCGGCCTGTACCACCGCATCCAGCCTTCGACGGGCGCTGTC 3554 Query 8116 ATCGCCGGCTGGGCCAACTACATGAACGCGACCACGAAGC 8155 ||| |||| |||| ||||||| ||| ||||| |||||| Sbjct 3553 ATCACCGGGTGGGACAACTACCTGACTGCGACTTCGAAGC 3514 Score = 158 bits (174), Expect = 3e-34 Identities = 137/170 (81%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 8429 TCGTGGGCGACTTCCGCGACGGCGTTCGCTGGGGCGTCCAGCGGGAAATCCCCGTCGAAC 8488 |||| ||||||||| | ||||| ||||||||||| | |||||| | | ||||| || | Sbjct 3213 TCGTTGGCGACTTCACCAACGGCATTCGCTGGGGCATTCAGCGGAACCTGCCCGTTGAGC 3154 Query 8489 TGATCAAGTACGGCGACCCGGACGGACAGGGCGACCTCAAGCGGTTCAACCAGATCGCGC 8548 |||||| ||||||||||||||||| ||||||||||| || ||||||||||| | Sbjct 3153 TGATCACCTACGGCGACCCGGACGGGCAGGGCGACCTGCGCCGCAAGAACCAGATCGCCC 3094 Query 8549 TGCGACTGGAAATCGTCTACGGGTGGTACGTCTTCCTGGATTCGTTCGTC 8598 |||||||||| ||||||| ||| |||||||||||| |||| |||||| Sbjct 3093 TGCGACTGGAGATCGTCTTCGGCTGGTACGTCTTCACGGATCGCTTCGTC 3044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144392391154830