Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_028961.1 Length=55094 Score E Sequences producing significant alignments: (Bits) Value seq117 96.9 1e-15 >seq117 Length=8551 Score = 96.9 bits (106), Expect = 1e-15 Identities = 139/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 42311 TGGGCGGCTGAGTGCTTGCGTGTGTTGAAACCGGGCGGTCACATGTTGGCGTTCGGCGGC 42370 ||||| | | ||||| || || | || || || || ||||| || ||||| ||| Sbjct 7792 TGGGCCGAAGCGTGCTACCGGGTACTCAAGCCCGGTGGACACATCGCCGCTTTCGGTGGC 7851 Query 42371 TCGCGCACCTGGCACCGGCTGGCGGTGGCGATCGAGGATGCCGGGTTCGAGGTCCGTGAC 42430 | |||||||||||||| || || || || ||||| || || || ||||| | || ||| Sbjct 7852 ACCCGCACCTGGCACCGCCTCGCCGTCGCCATCGAAGACGCAGGATTCGAAATGCGCGAC 7911 Query 42431 TCCATCGCGTGGCTGTACGGCCAGGGAATGCCGAAAAGCCTTGACGTGTCTAAGGCCATC 42490 ||| |||| ||||| ||||| ||| | ||||| | | |||||| ||||| ||| Sbjct 7912 TCCCTCGCCTGGCTATACGGGTCAGGATTCCCGAAGTCCTTGGACGTGGGGAAGGCAATC 7971 Query 42491 GACAAGGCCGCCGGC 42505 ||| ||||| |||| Sbjct 7972 GAC-AGGCCAACGGC 7985 Score = 89.7 bits (98), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 42614 GTCACCGCGCCAGCCACTGATGCGGCCAAGCAGTGGCAGGGCTGGGGCACGGCGCTGAAA 42673 |||||||| || || ||| || |||| ||||||| | |||||||||||||| || || Sbjct 8302 GTCACCGCCCCCGCGACTCCTGAGGCCGCGCAGTGGGACGGCTGGGGCACGGCTCTAAAG 8361 Query 42674 CCATCGTTTGAGCCCGTCGTGGTCGCGCGCAAGCCTCT---CGTGGGCACGGTGGCGGCG 42730 || |||||||||| ||||| |||| || ||||| || || | || || || | Sbjct 8362 CCCGCGTTTGAGCCTATCGTGCTCGCCCGTAAGCCCCTCGCCGAGAAGACCGTTGCTAGG 8421 Query 42731 AACGTACTGGAGCACGGTACGGGGGCGTTGAACATCGACGCCTGCCGCATCGG 42783 ||||| || | | | || || || || | ||| | ||||| ||| | ||||| Sbjct 8422 AACGTCCTCGCGTATGGGACCGGAGCAATCAACGTGGACGCGTGCAGGATCGG 8474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176177725049760