Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq334 158 5e-34 >seq334 Length=7771 Score = 158 bits (174), Expect = 5e-34 Identities = 287/410 (70%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 2024 GGTTTCGGCCGCGGTTTCGCCAAGGTCGACGTGCTGATTTTCGACGAGGCTCAGATCCTC 2083 || ||||| || || ||||| ||||| ||||||||||| ||||| ||||| ||||||||| Sbjct 7108 GGCTTCGGTCGTGGGTTCGCGAAGGTGGACGTGCTGATCTTCGATGAGGCGCAGATCCTC 7049 Query 2084 AGTGAAAACGCAATGGACGACATGGTTCCGGCGACCAACGCCTCGCCTAACGGCCTGATC 2143 | || || || ||||| |||||||||||||| || ||||| | ||||| || ||| | Sbjct 7048 ACGGAGAAGGCCATGGAGGACATGGTTCCGGCAACGAACGCGGCACCTAATGGTCTGGT- 6990 Query 2144 CTGTTCGCG---GGCACCCCGCCGAAGCCGACAGACCCCGGCGAGGTGTTCACCAACCTG 2200 |||| | ||||| || ||| || || ||||| |||||||||||| | | || Sbjct 6989 --GTTCATGATCGGCACTCCCCCGCGCCCCACGGACCCGGGCGAGGTGTTCTCGA---TG 6935 Query 2201 CGACTGGACGCG---ATCAACGGCGAGTCTGAC---GACGTTGCGTATGTCGAGATTTCG 2254 || | ||||||| | |||||| ||| ||||| ||| || ||| | ||| Sbjct 6934 CGCCGGGACGCGGCACTGTCGGGCGAG---GACCCGGACGTGATGTACGTGGAGCTGTCG 6878 Query 2255 GCCGACGAGAGCGACGACCCAGACGAAGAGTCGACGTGGCGCAAGATGAATCCGAGCTAC 2314 ||||| || || |||| ||||| || ||||||| ||| ||| ||| | | Sbjct 6877 GCCGATAAGGACGCGAACCCGGACGACCGTGCGGCGTGGCGGAAGGCGAACCCGTCGTTC 6818 Query 2315 CCGCACCGGACGTCTGCCCGCGCTATCCGCCGTATGCGTAA------AGCGT-TGTCCTG 2367 |||||||||||| || |||| ||| || ||||| || | || |||| | Sbjct 6817 CCGCACCGGACGGGTGAGGGCGCGATCTTGCGCATGCGGAAGCTGCTGGGGTCTGTC--G 6760 Query 2368 GGACAGTTTCAGGCGCGAGGCAATGGGCATCTGGGACAAG-ATCAGCGTG 2416 | | ||||| | || |||| |||||||||||||| || | ||||||| Sbjct 6759 AGTC-GTTTC-GCCGTGAGGGTCTGGGCATCTGGGACGAGAAGCAGCGTG 6712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193825577302910