Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_028979.1 Length=57253 Score E Sequences producing significant alignments: (Bits) Value seq334 253 7e-63 >seq334 Length=7771 Score = 253 bits (280), Expect = 7e-63 Identities = 484/701 (69%), Gaps = 24/701 (3%) Strand=Plus/Minus Query 2636 GAAGCGGCCCGATGGGCTGTACGCCGCCGACATGTTCGGCATG------TCGATTCCGCG 2689 |||||| | ||||||| ||| || || | ||| ||| || |||||||| || Sbjct 7411 GAAGCGCGCGGATGGGCAGTATGCGGCGGGCATTGGTGGCGTGGTGGCGTCGATTCC-CG 7353 Query 2690 CCAGACCGGCAAGACGTACCTGTTGGGTGCGATCGTGTT-CGCGCTGTGCG-TGGCGGCT 2747 |||| ||| ||||||||| | | ||| || | ||||| |||| || ||| ||| | | Sbjct 7352 CCAGGTCGGGAAGACGTACACGATTGGTTCGCT-GTGTTTCGCGTTG-GCGATGGTGAC- 7296 Query 2748 GTCGACCGGCCGCTGACCGTGATCTGGACGGCGCACCGGACCCGTACGGCCGCTGAGACG 2807 | || || | ||| | || ||||||||||| ||||| |||||| || |||||| Sbjct 7295 GCCGG--GGTCTTTGATCTTG---TGGACGGCGCATCGGACGCGTACGCATGCGGAGACG 7241 Query 2808 TTCAAGTCGATGCAGGGCTTCGCCAAGATGCCGCGCATCGAGCCGTACATCGAGAGGGTG 2867 || ||||||| || | || || |||| || |||||| | ||| |||| Sbjct 7240 TTTGGGTCGATGGCTGGGATGGCTGAGCGGCCGTCGATTAAGCCGTTTGTGGAGTCGGTG 7181 Query 2868 TCGCTGGCGCGCGGTGAGGAAGCCGTGATCTTCACCAACGGCTCCCGAATCCTGTTCGGC 2927 | |||| |||||| | || | | |||| ||||| || || || |||| || Sbjct 7180 CGTCGGGCGAATGGTGAGCAGGCGATCGTTTTCAAGAACGGTTCGCGCATTTTGTTTGGT 7121 Query 2928 GCGCGTGAACGCGGTTTCGGTCGTGGTTTCGCCGGTGTCGACGTGCTGATCTTCGACGAG 2987 || || || || ||||||||||| ||||| || ||||||||||||||||| ||| Sbjct 7120 GCTCGCGAGTCTGGCTTCGGTCGTGGGTTCGCGAAGGTGGACGTGCTGATCTTCGATGAG 7061 Query 2988 GCGCAGATTCTCACCGAGAACGCGATAGACGACATGGTGCCCGCGACGAACGCGGCACCT 3047 |||||||| ||||| ||||| || || || |||||||| || || ||||||||||||||| Sbjct 7060 GCGCAGATCCTCACGGAGAAGGCCATGGAGGACATGGTTCCGGCAACGAACGCGGCACCT 7001 Query 3048 AACCCGCTCATCATCCTGGCTGGGACGCCGCCGAAGCCGACCGATCCCGGCGAAGTGTTC 3107 || || | || || || || || ||| || || || || ||||| |||||| Sbjct 7000 AATGGTCTGGTGTTCATGATCGGCACTCCCCCGCGCCCCACGGACCCGGGCGAGGTGTTC 6941 Query 3108 ACGATGCTGCGGCACGACGCCATCACCGGCGAGGCCGACGGCGTGGGTTTCGTCGAAATC 3167 |||||| ||| ||| || | | ||||||| | | |||| | ||| || | Sbjct 6940 TCGATGCGCCGGGACGCGGCACTGTCGGGCGAGGACCCGGACGTGATGTACGTGGAGCTG 6881 Query 3168 TCGGCCGACCGGGACGCCGACCTCGACGACC--GCAGCCAGTGGCGCAAGATGAACCCGA 3225 |||||||| |||||| ||| ||||||| || || |||||| ||| ||||||| Sbjct 6880 TCGGCCGATAAGGACGCGAACCCGGACGACCGTGCGGC--GTGGCGGAAGGCGAACCCGT 6823 Query 3226 GCTACCCGCACCGCACGAGCGCCCGCGCGATCCTGCGTATGCGGAAAGCGCT---GTCGG 3282 | ||||||||| ||| | | |||||||| |||| |||||||| ||| ||| | Sbjct 6822 CGTTCCCGCACCGGACGGGTGAGGGCGCGATCTTGCGCATGCGGAAGCTGCTGGGGTCTG 6763 Query 3283 ATGACAGCTTTCGCCGCGAGGCGATGGGCATTTGGGACGAG 3323 || |||||||| |||| ||||||| ||||||||| Sbjct 6762 TCGAGTCGTTTCGCCGTGAGGGTCTGGGCATCTGGGACGAG 6722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183086467210150