Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq440 120 2e-22 seq664 87.8 1e-12 >seq440 Length=7283533 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || ||| | || || ||| ||||| | || || |||||| || Sbjct 660702 ATGCAAATTTTCGTCAAGACTTTGACGGGAAAAACCATTACTTTGGAGGTTGAAAGCTCC 660761 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| || || |||||||| ||| | || ||| | Sbjct 660762 GACACCATTGACAAC--GTTAAAGCCAAGATCCAAGACAAAGAGGGTATCCCTCCGGACC 660819 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || |||||||| ||| | || |||| ||| | |||| ||||||||| Sbjct 660820 AGCAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGTACCTTGGCCGATTACA 660879 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | |||||||| |||||| | ||||| || Sbjct 660880 ACATCCAGAAGGAGTCCACACTTCATTTGGTCTTGCGTCTCCGTGGTGG 660928 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||| | || || || ||||| | || ||||| ||| | Sbjct 660930 ATGCAAATCTTCGTTAAGACTTTGACGGGAAAGACCATTACCCTCGAGGTCGAGAGCTCT 660989 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || |||||||| ||| | || ||| | Sbjct 660990 GACACAATTGACAAC--GTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCCCCGGACC 661047 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || || |||||||| ||| | || || | || | |||| ||||||||| Sbjct 661048 AGCAGAGATTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCTTGGCCGATTACA 661107 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | |||||||| |||||| | ||||| || Sbjct 661108 ACATCCAGAAGGAGTCCACACTTCATTTGGTCTTGCGTCTCCGTGGTGG 661156 >seq664 Length=12074320 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||| | || |||||| || || | || || || ||| || Sbjct 3113915 ATGCAGATCTTTGTGAAGACTTTGACCGGGAAAACCATCACTCTAGAAGTGGAGAGCTCC 3113856 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| ||||| ||||| ||||| | || ||| | Sbjct 3113855 GACACCATTGACAAC--GTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCGGACC 3113798 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || || ||||| || | || || | |||| |||| | ||||||| Sbjct 3113797 AGCAGAGGTTGATCTTCGCAGGAAAGCAGCTTGAGGATGGTCGCACCTTGGCTGATTACA 3113738 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || || || | || |||||||||||| | ||||| || Sbjct 3113737 ACATTCAGAAGGAATCGACCCTTCACTTGGTTTTGCGTCTACGTGGAGG 3113689 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 27784 AGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA 27843 || || ||||| || || |||||||| || || ||||| || || | || |||||| Sbjct 406855 AGAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTCGAA 406796 Query 27844 AGCACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 | ||||| || ||||| |||||| || || ||||| ||||| | || Sbjct 406795 TCCTCCGACACCATCGACAAT--GTCAAAGCGAAGATCCAAGACAAGGAAGGGATCCCAC 406738 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCC 27960 ||| ||||| || || ||||| ||||| ||||| |||| |||| |||| ||| | || Sbjct 406737 CGGACCAGCAGCGATTGATTTTCGCCGGGAAACAGCTGGAAGACGGCCGCACGCTCG-CC 406679 Query 27961 GATTACAACATCCAAAAAGAG 27981 || ||||||||||| || ||| Sbjct 406678 GACTACAACATCCAGAAGGAG 406658 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||| | ||||||||| || || | || || || ||| || Sbjct 3114143 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAAACCATCACTCTAGAGGTGGAGAGCTCC 3114084 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| ||||| ||||| ||||| | || ||| | Sbjct 3114083 GACACCATTGACAAC--GTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCGGACC 3114026 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || || ||||| || | || || | |||| ||| | || |||| Sbjct 3114025 AGCAGAGGTTGATCTTCGCAGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCTGACTACA 3113966 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || || | || ||||| |||||| | ||||| || Sbjct 3113965 ACATCCAGAAGGAATCGACCCTTCACTTGGTCTTGCGTCTACGTGGAGG 3113917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355859342363535