Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq664 84.2 2e-11 seq393 84.2 2e-11 >seq664 Length=12074320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| ||||| ||| || || || || || ||||| || || || |||| || Sbjct 406640 CACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTC 406699 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 |||||||| || || || || | |||||||||| ||||||| | || || ||||| Sbjct 406700 CAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTCTT 406758 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| ||||| | | | || ||| || || || || | || || | | Sbjct 406759 GGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATGGTCT 406818 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | ||||| || ||||| || ||||| ||||||||| Sbjct 406819 TCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 406853 >seq393 Length=11819561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | || || || ||||| || || || ||| || || ||||| |||||||| Sbjct 8004366 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCC 8004425 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || || | || |||||||| ||||| || || || | | ||||||||| | || Sbjct 8004426 AAGGTACGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAATCTCTGCTGGTCCGGAGGG 8004485 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCAC 39236 | | || |||||| ||| || || | ||| | | | || ||| ||| || Sbjct 8004486 ATACCTTCCTTGTCCTGGATCTTAGCCTTTA-CGTTGTCGATAGTGTCGGAGCTCTCAAC 8004544 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||||| | ||||| |||| |||||||| ||||||||||| Sbjct 8004545 CTCCAAAGTGATAGTCTTTCCAGTCAAGGTTTTAACGAAGATTTGCAT 8004592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429541909263665