Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq440 120 2e-22 seq350 109 4e-19 seq393 104 2e-17 seq664 95.1 8e-15 >seq440 Length=7283533 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || ||||| ||||| || ||||| ||||| || || | | Sbjct 660246 ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGAAAGCTCT 660305 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | || | | ||||| |||||| | || || ||||| Sbjct 660306 GACACCATCGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAAGGTATTCCTCCGGATCA 660364 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || ||||| || |||| || || || | |||||||| Sbjct 660365 GCAGAGGCTTATCTTCGCCGGAAAGCAACTCGAGGACGGCCGTACCTTGGCTGATTACAA 660424 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||||||| | || || ||| ||||| | || || || Sbjct 660425 CATCCAGAAGGAGTCCACACTTCACTTGGTTCTAAGGCTCCGTGGTGG 660472 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | ||||||||||| || ||| | || ||||| | | Sbjct 660702 ATGCAAATTTTCGTCAAGACTTTGACGGGAAAAACCATTACTTTGGAGGTTGAAAGCTCC 660761 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || ||||| | || || |||||||| ||| | || || || || Sbjct 660762 GACACCATTGACAACGTTAAAGC-CAAGATCCAAGACAAAGAGGGTATCCCTCCGGACCA 660820 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || ||||| || |||| ||| || || | ||||||||| Sbjct 660821 GCAGAGGTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGTACCTTGGCCGATTACAA 660880 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| || || ||||||||| | ||||| || || Sbjct 660881 CATCCAGAAGGAGTCCACACTTCATTTGGTCTT 660913 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| |||||||| || |||||||| || || || | | Sbjct 6972961 ATGCAGATCTTCGTCAAGACCCTTACGGGAAAGACCATCACTCTGGAGGTCGAGAGCTCT 6972902 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | |||| || || || || ||| | || || || || Sbjct 6972901 GACACCATCGACAATGTCAAGGCTAAAA-TTCAAGATAAGGAGGGTATCCCACCGGACCA 6972843 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || || ||||||| || ||||| | |||||||| Sbjct 6972842 GCAGAGATTGATCTTTGCAGGAAAGCAGCTTGAAGACGGCCGAACTTTGGCTGATTACAA 6972783 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 6972782 CATCCAAAAGGAGTCTAC 6972765 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || | |||||||| || || || ||||| || || | | Sbjct 660930 ATGCAAATCTTCGTTAAGACTTTGACGGGAAAGACCATTACCCTCGAGGTCGAGAGCTCT 660989 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| |||||||| ||| | || || || || Sbjct 660990 GACACAATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAGGGTATCCCCCCGGACCAG 661049 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || ||||| || ||||| || || | || || || | |||||||||| Sbjct 661050 CAGAGATTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCTTGGCCGATTACAAC 661109 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || ||||||||| | ||||| || || Sbjct 661110 ATCCAGAAGGAGTCCACACTTCATTTGGTCTT 661141 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| ||||| || ||||| ||||| || || | | Sbjct 6973189 ATGCAGATCTTCGTAAAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGAAAGCTCT 6973130 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | || | | || || ||||| | ||||| || || Sbjct 6973129 GACACCATCGACAACGTTAAAGCGAAGA-TCCAGGATAAGGAAGGCATCCCGCCGGACCA 6973071 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || || || ||||||| || ||||| | ||||||||| Sbjct 6973070 GCAGAGGCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGAACTTTGGCCGATTACAA 6973011 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || |||||||| | || || ||| Sbjct 6973010 CATCCAGAAGGAGTCCACGCTCCACTTGGTT 6972980 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||||||||| ||||| | | Sbjct 6972733 ATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAGAGCTCA 6972674 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | ||| ||||| |||||||||||| | || || || || Sbjct 6972673 GATACTATCGACAACGTCAAAGCTAAAATCCAGGACAAAGAAGGTATCCCCCCGGACCAG 6972614 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || || || || || || || | ||||| || | || |||||| Sbjct 6972613 CAGAGATTGATCTTCGCAGGAAAGCAGCTTGAGGATGGTCGCACATTGGCTGACTACAAC 6972554 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||||| || | || || ||| Sbjct 6972553 ATCCAGAAGGAGTCGACCCTTCACTTGGTT 6972524 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || | |||||||| || || |||||||| || || | | Sbjct 661158 ATGCAGATCTTCGTTAAGACTTTGACGGGAAAGACCATTACTCTCGAGGTCGAGAGCTCT 661217 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| || || || |||||| | || || || || Sbjct 661218 GACACCATCGACAACGTCAAGGCAAAGATCCAGGATAAGGAAGGTATCCCTCCGGACCAG 661277 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || || || || | ||||| || | |||||||||| Sbjct 661278 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACAAC 661337 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | || || || || | |||| ||||| Sbjct 661338 ATTCAGAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGAGG 661384 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || | || || || || |||||| | || || || | | Sbjct 6972505 ATGCAGATTTTCGTTAAGACATTGACCGGGAAGACCATCACTTTAGAGGTGGAGAGCTCC 6972446 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || || ||||| |||||| | || || || || Sbjct 6972445 GACACCATTGACAACGTTAAGGC-TAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCA 6972387 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || || || | ||||| || | || ||||| Sbjct 6972386 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACATTGGCTGACTACAA 6972327 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || |||||||| || | ||||| || Sbjct 6972326 CATCCAGAAAGAGTCGACCCTCCATTTGGT 6972297 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || ||||| || ||||| || || | Sbjct 661614 ATGCAGATTTTCGTGAAGACCTTGACCGGTAAGACGATAACCCTCGAGGTGGAGAGTTCC 661673 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || ||||| || Sbjct 661674 GACACAATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCAGACCAG 661733 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || || | ||||| |||| ||| |||||| Sbjct 661734 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTAGCCGACTACAAC 661793 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 661794 ATCCAGAAGGAGTCGAC 661810 >seq350 Length=9129079 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || |||||| | ||||| || ||||| || || || ||||| || Sbjct 5338734 AAAATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACGATAACCCTAGAGGTTGAATCG 5338675 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | || | | ||||| ||||| | || || || Sbjct 5338674 TCGGACACGATCGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAAGGGATCCCACCGGA 5338616 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||||| | ||||| ||||| || ||||| ||||||| | | || | | ||||| Sbjct 5338615 TCAGCAGCGGCTGATATTCGCCGGGAAGCAACTTGAAGACGGAAGGACACTCGCGGATTA 5338556 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||| || || || || || | || || ||| | | || |||||||| Sbjct 5338555 CAACATCCAGAAGGAATCGACGCTTCACTTGGTTCTTCGTCTGAGAGGAGGA 5338504 >seq393 Length=11819561 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||||||| |||| |||||||||||| | | ||||||||||| || ||||||||| Sbjct 4935936 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGTAAGCAACTGGAA 4935877 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || ||| ||||||||||| || |||||||| || | || | || || Sbjct 4935876 GATGGCCGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCACCTCGTCTTG 4935817 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | |||| ||| Sbjct 4935816 AGGCTCAGAGGTGGA 4935802 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || |||||||| || || || | | Sbjct 8004136 ATGCAGATTTTCGTGAAGACCTTGACCGGTAAGACCATCACTCTAGAGGTGGAGAGCTCC 8004077 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| ||||| | || || || || Sbjct 8004076 GACACCATTGATAACGTGAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCGGACCAG 8004017 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || || || | ||||| |||| ||| |||||| Sbjct 8004016 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTAGCCGACTACAAC 8003957 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 8003956 ATTCAGAAGGAGTCGAC 8003940 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||||||| | || ||||| || |||||| | || ||||| | | Sbjct 8004592 ATGCAAATCTTCGTTAAAACCTTGACTGGAAAGACTATCACTTTGGAGGTTGAGAGCTCC 8004533 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | |||| || || ||||| |||||| | || || || || Sbjct 8004532 GACACTATCGACAACGTAAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCAG 8004473 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || ||||| || || || || | || || || | ||||||||| Sbjct 8004472 CAGAGATTGATCTTCGCAGGCAAGCAGCTTGAGGATGGTCGTACCTTGGCCGATTACAAT 8004413 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 8004412 ATCCAGAAGGAGTCTAC 8004396 >seq664 Length=12074320 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| || | || ||||| || || ||| | || ||||| | | Sbjct 3114599 ATGCAGATTTTTGTTAAGACGTTGACTGGAAAGACCATTACTTTGGAGGTTGAAAGCTCC 3114540 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || ||| ||||| || ||| | || || || || Sbjct 3114539 GACACCATTGACAACGTCAAAGCTAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAG 3114480 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || |||||||| || || ||||||| || ||| | | || |||||| Sbjct 3114479 CAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACTCTCGCTGACTACAAC 3114420 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || ||||| | || | ||| | || || || Sbjct 3114419 ATTCAGAAGGAGTCTACTCTACATCTCGTCCTCAGGCTCCGTGGGGG 3114373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006695758140