Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq481 100 4e-16 seq320 91.5 2e-13 seq385 87.8 3e-12 >seq481 Length=6868915 Score = 100 bits (110), Expect = 4e-16 Identities = 383/594 (64%), Gaps = 8/594 (1%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || ||||| || || | ||||||||||| | || || ||||| || || || | Sbjct 949346 CAGGCGAAATCGCAGTGTAAGCCTTCATCTCGAGAGATCAACTCGTTGGAGAAGGTCAAT 949287 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748 || ||||| || || ||||| || ||||| || || | || ||| | || || ||||| Sbjct 949286 CCCGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCG-AGCAGAAGCTACCGGAGAAGAA 949228 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGA 46806 || ||||| || ||||| |||| | ||| || || | ||| ||| | Sbjct 949227 GATACCTTCGACGCAGGCGAAAGCGATGATTCTTTCGGCGAAGGTCTGAGATC--CGTCG 949170 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 |||||| | ||||| | || || ||| || ||||| || ||||| || || Sbjct 949169 ATCCACTTCATGGCCCACTGTGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCTCGG 949110 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 |||||| || | | || | | || || | || ||||| | | ||||| ||||| Sbjct 949109 AAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTACGTATCGAGGAGGAGACTGTACATC 949050 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || ||||| || || || ||||| ||||| || ||| | || || | | Sbjct 949049 TCCGAGTGGATGTTCTCGATCGCGATCTGGAATCCATAGAAAGCACGCGCCTCCGAGACT 948990 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGC 47045 ||||| || | ||| | | | | ||| |||||| || ||||| || || || Sbjct 948989 TGTACATC-GGACATGAACCTGGAAGCAAGATTCTCCAGGACGATTCCGTCTGAGGCGGC 948931 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC 47105 || || || | || ||||| || || | | || || | || || | |||||| Sbjct 948930 GAAGAAAGCGAGGACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGATTCTCCCAGTC 948871 Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 |||| |||| || |||||||| || |||||||| || || || || || || Sbjct 948870 GCGACCGTCTTGCGATAGGTCGACTTCTTCCGCCGTCCAGAAAGATGCTTCGGCCTTCTT 948811 Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 ||||| | ||| || | | || ||||| || || ||| ||||| | ||| Sbjct 948810 GTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 948757 >seq320 Length=3991519 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||||||||| || | |||||||||||||||||||||||| | | || | | || Sbjct 317071 AGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGCGACATCAAATG 317012 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| || | || | | || ||||| | ||| || || || ||||| || | ||| | Sbjct 317011 GTAAGTCTTGATTGCAGAATCAATATCGTCCTTG-TGGATGCCAACAGCAACCCTCATTA 316953 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| |||||||| | ||| ||| || || | ||| || | ||| ||| | || | Sbjct 316952 GCATGTGCTGAGGCCTTTCAACAACTTTGCCATGGACTTTTAAGAGGTACGATCTCTCAA 316893 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||| || ||||| || | ||| ||| || | ||||| || || Sbjct 316892 GAGTTTTGAATCCAAAGTAATCATATTCAAAATCACGGTCGTAGATGAT 316844 Score = 86.0 bits (94), Expect = 9e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| | || || | |||||||| |||||||| ||| ||||||| Sbjct 317852 CTCTCTTTCATACTTAGTGTACAGTTTCTCAAATTCGGCTCCCCAACAATCTGCCAAACC 317793 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||||| | ||||| | || |||||||| ||||| || |||| | ||| || Sbjct 317792 CGGAGATTCACTAGGACAAAACAGTGACCACTGCCCATCACTCTGGACCCTCTCCATGAA 317733 Query 76612 GAGATCAGGTATCCATAGAGCAATAAA 76638 ||||| || | ||||||||| ||||| Sbjct 317732 AAGATCTGGAACCCATAGAGC-ATAAA 317707 >seq385 Length=11279646 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 ||||| || || || || | |||||||| | |||||| ||| ||||||||||| | Sbjct 381008 TCATACTGAGTGTACAATCTCTCAAATTCTGCACCCCAACAATCTGCCAAACCAGGAGCT 380949 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||| ||||| | || |||||||| ||||| || |||| | ||| || ||||| Sbjct 380948 TCATTAGGACAAAACAGTGACCACTGCCCATCACTCTGGACCCTCTCCATGAAAAGATCT 380889 Query 76619 GGTATCCATAGAGCAATAAA 76638 |||||||| ||| | ||||| Sbjct 380888 GGTATCCAAAGA-CCATAAA 380870 Score = 86.0 bits (94), Expect = 9e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| | ||| || | || ||||||||||||||||||||| | ||| | | || Sbjct 380262 AGTTCCAGAATTGAAGAGAGTGGGAGATGCATGAGTGAACCATCGCTGAGACATCAAATG 380203 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| ||| | | || ||||| | ||| ||||| || |||| || | ||| | Sbjct 380202 GTAAGTTTGGATAGCGGAATCAATATCTTCCTTG-TGAATGCCAACAGAAACCCTCATGA 380144 Query 77112 ACATATGCTGAGGTCGTTCTA-CAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 77170 ||| |||||||| | ||| | || | || | | | ||| || | ||||||| | || Sbjct 380143 GCATGTGCTGAGGCCTTTCAATCACTTTTCCT-TGGACTTTTAAGAGGTATGATCTCTCG 380085 Query 77171 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 | ||||| || ||||| |||| ||| ||| || | || ||||| || Sbjct 380084 AGTGTTTTGAATCCAAAGTAGTCATATTCAAAATCGCGATCATAAATGAT 380035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712928117265600