Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_031111.1 Length=53623 Score E Sequences producing significant alignments: (Bits) Value seq117 188 2e-43 >seq117 Length=8551 Score = 188 bits (208), Expect = 2e-43 Identities = 211/277 (76%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 41644 GCTTGTCGATGGCCTTGGACACGTCGAGCGACTTCGGGAACCCGCTGCCGTAGAGCCAGG 41703 || ||||||| ||||| |||||| | ||||||||||| || ||||| ||||||| Sbjct 7978 GCCTGTCGATTGCCTTCCCCACGTCCAAGGACTTCGGGAATCCTGACCCGTATAGCCAGG 7919 Query 41704 CGATGGAGTCACGAATCTCGAAGCCCGCGTCCTCGATGGCCACGGTCAGCCGGTGCCAGG 41763 ||| |||||| || || ||||| || ||||| |||||||| |||| || |||||||||| Sbjct 7918 CGAGGGAGTCGCGCATTTCGAATCCTGCGTCTTCGATGGCGACGGCGAGGCGGTGCCAGG 7859 Query 41764 TGCGGGAGCCGCCGAAGGCGAGCAGGTGCCCACCGGGCTTGAGGACCCGCAGGCATTGCT 41823 |||||| ||| ||||| ||| | ||| |||||||||||||| ||||| ||| ||| Sbjct 7858 TGCGGGTGCCACCGAAAGCGGCGATGTGTCCACCGGGCTTGAGTACCCGGTAGCA-CGCT 7800 Query 41824 CC--CACATCTCGACATCGAAGGCGATACCCGAGCCGTCCCACTTCTTGCCCATGAATCC 41881 | | ||| || || || || | | ||||||||| |||||||||||||| || Sbjct 7799 TCGGCCCAT-TC--CAGTGACGGGGGAA----GGCCGTCCCATTTCTTGCCCATGAAGCC 7747 Query 41882 CAGTTCGTAGGGTGGGTCGGTGACGATGGAGTCGACG 41918 || ||||||| |||||||||||||| | ||| ||| Sbjct 7746 GAGGCCGTAGGGCGGGTCGGTGACGATTGCGTCAACG 7710 Score = 86.0 bits (94), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 41164 CGATGCGGCAGGCGTCGATGTTCAGCGCGCCGGTGCCATGCTCCAGCACATTCGCAGCCA 41223 |||| | ||| ||||| | ||| | || ||||| |||| | | || || ||| ||| | Sbjct 8473 CGATCCTGCACGCGTCCACGTTGATTGCTCCGGTCCCATACGCGAGGACGTTCCTAGCAA 8414 Query 41224 CCGTG--CCCGAC-AGCGGTTTCCGGGCCACTACGATCGGCTCGAACGCGGGCTTGAGCG 41280 | || | || | || || || ||||| | ||||| ||||| ||||||||||| || | Sbjct 8413 CGGTCTTCTCGGCGAGGGGCTTACGGGCGAGCACGATAGGCTCAAACGCGGGCTTTAGAG 8354 Query 41281 CCGTGCCCCAGCCCTGCCACTGC 41303 ||||||||||||| | ||||||| Sbjct 8353 CCGTGCCCCAGCCGTCCCACTGC 8331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171470564457850