Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conringia_20planisiliqua_20[genbank_20GCA_5F900108845.1_202016-12- 31] 705 sequences; 184,155,600 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq393 134 1e-26 seq440 125 7e-24 seq664 120 3e-22 seq350 100 3e-16 >seq393 Length=11819561 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || ||||| | |||||| || ||||| ||||||||| ||||| ||||||| Sbjct 356983 CGCCTCCACGGAGACGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 357042 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||| |||||| |||| || |||||||| ||||||||||||| | ||| ||||||| | Sbjct 357043 CGAGTGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAATATCAATCTCTGCTGGTCCGGAG 357102 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | | ||||||||| ||| || |||| || | | | ||||| || || Sbjct 357103 GGATTCCTTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATCGTGTCCGAGGATTCG 357161 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || || || ||||| || || || ||||| |||||||| || Sbjct 357162 ACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 357214 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||||||||| || || || ||||||||| ||||| ||||||| Sbjct 8004138 CCACCACGAAGACGTAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGGCT 8004197 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 8004198 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGA 8004257 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || |||||||||| || |||| |||| || | | | ||||| ||| ||| Sbjct 8004258 ATGCCCTCCTTGTCC-TGGATTTTGGCTTTGACATTGTCGATGGTGTCTGAGCT---CTC 8004313 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || ||||| |||| ||||| || || |||||||| Sbjct 8004314 AACCTCTAGAGTAATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 8004364 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||||||||| ||||||| Sbjct 8003910 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCT 8003969 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 8003970 AAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 8004029 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || || | ||| | | |||||| |||||| Sbjct 8004030 ATGCCTTCCTTGT-CTTGAATCTTGGCCTTCACGTTATCAATGGTGTCGGAGCTCTCCAC 8004088 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||| |||| ||||| |||||||||||||| Sbjct 8004089 CTCTAGAGTGATGGTCTTACCGGTCAAGGTCTTCACGAAAATCTGCAT 8004136 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || |||||||| || ||||||||||||||| ||||| | ||| || || | || || Sbjct 8004612 ACGAGATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTTCGGCCATCTTCA 8004671 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| |||||||| |||| | ||| ||||||| |||| | |||||||||| || Sbjct 8004672 AGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCC-TG 8004730 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || || | ||| | | |||||| ||| ||||||| || || || || Sbjct 8004731 AATCTTAGCCTTGACGTTATCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTT 8004790 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| |||||| || || |||||||| Sbjct 8004791 TCCCGTCAACGTCTTAACAAAGATCTGCAT 8004820 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| || |||| || || || ||||||||| || || || |||| Sbjct 8004366 CCTCCACGTAGACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCC 8004425 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || ||||||||||| ||||| |||| | ||| ||||||| || Sbjct 8004426 AAGGTACGACCATCCTCAAGCTGCTTGCCTGCGAAGATCAATCTCTGCTGGTCCGGAGGG 8004485 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || | || || | ||| | | | ||||||| ||| || Sbjct 8004486 ATACCTTCCTTGTCC-TGGATCTTAGCCTTTACGTTGTCGATAGTGTCGGAGCTCTCAAC 8004544 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || |||| || || ||||| || ||||| Sbjct 8004545 CTCCAAAGTGATAGTCTTTCCAGTCAAGGTTTTAACGAAGATTTGCAT 8004592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||||| || |||||| || ||||| ||||| | | || || | || ||| Sbjct 8005296 ACGAGATGCAAAGTCGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCGGCCATCTTCG 8005355 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| |||||||| || || | ||| || |||| || | | ||||||||| || Sbjct 8005356 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGGATACCTTCCTTGTCC-TG 8005414 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || |||| |||| | | | |||||| ||||||||| | || || || || Sbjct 8005415 GATCTTGGCTTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTT 8005474 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || |||||||| Sbjct 8005475 TCCGGTGAGAGTTTTCACAAAGATCTGCAT 8005504 >seq440 Length=7283533 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||||| Sbjct 661840 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 661781 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || ||||||||||| || ||||| || || ||||| ||||| | ||| Sbjct 661780 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGA 661721 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || |||| ||| | | |||||| |||||| Sbjct 661720 ATGCCTTCCTTGTCTTGGATCTTGGCCTTC-ACGTTATCAATTGTGTCGGAACTCTCCAC 661662 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | |||||||| ||||| |||| ||||| |||||||||||||| Sbjct 661661 CTCGAGGGTTATCGTCTTACCGGTCAAGGTCTTCACGAAAATCTGCAT 661614 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || || ||||||||||||||| || |||| Sbjct 661384 CCTCCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCC 661325 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || ||||||||||| |||||||| || || ||||| ||||||| || Sbjct 661324 AAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 661265 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||| ||| || | ||||| | ||| | | | ||||| ||| ||| Sbjct 661264 ATACCTTCCTTATCC-TGGATCTTTGCCTTGACGTTGTCGATGGTGTCAGAGCT---CTC 661209 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || ||||||| ||||| ||||| |||||||| Sbjct 661208 GACCTCGAGAGTAATGGTCTTTCCCGTCAAAGTCTTAACGAAGATCTGCAT 661158 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | |||| || |||||| ||||||||| ||||| || |||| Sbjct 6972963 CCACCACGTAGACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCC 6973022 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| ||||||||||| |||||||| || || | ||| ||||||| || Sbjct 6973023 AAAGTTCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGG 6973082 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||| ||| || | || |||| |||| | | | ||||| ||| || Sbjct 6973083 ATGCCTTCCTTATCC-TGGATCTTCGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTC 6973138 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || || || || || || ||||||||||| |||||||| Sbjct 6973139 CACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 6973189 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| ||| || || ||| ||||| ||||| ||||| | Sbjct 6972278 GCCACCACGAAGACGGAGGACCAAATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGC 6972337 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || ||||||||||| || ||||| || || ||||| ||||||| || Sbjct 6972338 CAATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 6972397 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||||||||| || | || || | |||| | | | |||||| ||||| Sbjct 6972398 GATACCTTCCTTGTCC-TGGATCTTAGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCCA 6972456 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || |||| ||||| |||||||||||||| Sbjct 6972457 CCTCTAAAGTGATGGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 6972505 Score = 104 bits (114), Expect = 2e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| | | ||||| | || |||||||||||||| ||||| Sbjct 661577 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAA 661518 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| ||||||| |||| | ||||||||| || | || || | ||| Sbjct 661517 GATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCC-TGGATCTTAGCCTTGACGT 661459 Query 41791 CGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846 | | | ||||| ||| ||| ||||||| ||| || || || || || || |||| Sbjct 661458 TGTCAATGGTGTCAGAGCT---CTCAACCTCCAACGTGATAGTCTTGCCGGTAAGTGTCT 661402 Query 41847 TTACGAAAATCTGCAT 41862 | ||||| |||||||| Sbjct 661401 TCACGAAGATCTGCAT 661386 >seq664 Length=12074320 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||||||||||||||| ||||| | ||| || || |||| || Sbjct 3114391 ACGAGATGTAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTTCGGCCGTCTTCA 3114450 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||||||||| |||| | ||| ||||||| || | | |||||||| | || Sbjct 3114451 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGT-CTTG 3114509 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || |||| ||| | | | |||||| || ||||||| || || || || Sbjct 3114510 AATCTTAGCTTTGACGTTGTCAATGGTGTCGGAGCTTTCAACCTCCAAAGTAATGGTCTT 3114569 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| |||||| || ||||||||||| Sbjct 3114570 TCCAGTCAACGTCTTAACAAAAATCTGCAT 3114599 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| || |||| || || || |||||||||||||| || || | Sbjct 3113689 CCTCCACGTAGACGCAAAACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCC 3113748 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || |||||||| || ||||| |||| | ||| ||||||| || Sbjct 3113749 AAGGTGCGACCATCCTCAAGCTGCTTTCCTGCGAAGATCAACCTCTGCTGGTCCGGAGGG 3113808 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | || |||| |||| ||| | | | |||||| |||||| Sbjct 3113809 ATGCCTTCCTTGT-CTTGGATTTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCAC 3113867 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || |||| ||||| || || |||||||| Sbjct 3113868 TTCTAGAGTGATGGTTTTCCCGGTCAAAGTCTTCACAAAGATCTGCAT 3113915 >seq350 Length=9129079 Score = 100 bits (110), Expect = 3e-16 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| || ||||| |||||||| ||||| || || | ||| || | Sbjct 5338514 AGACGAAGAACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTT 5338573 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGGAACGCTCTC 41763 |||| || || ||||| |||||||||||||| ||||| || ||| | |||| | || || Sbjct 5338574 CCGTCTTCAAGTTGCTTCCCGGCGAATATCAGCCGCTGCTGATCCGGTGGGATCCCT-TC 5338632 Query 41764 CTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCG 41822 ||||||| ||| || |||| || | | | ||||| ||| || ||||| | | Sbjct 5338633 CTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATCGTGTCCGACGATTCAACCTCTAGGG 5338691 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||| || ||||| | || || || || |||||||| || Sbjct 5338692 TTATCGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 5338734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299925946000