Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq945 223 4e-53 seq3314 91.5 2e-13 >seq945 Length=6199 Score = 223 bits (246), Expect = 4e-53 Identities = 407/584 (70%), Gaps = 13/584 (2%) Strand=Plus/Minus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 || ||| |||||||||||||| || ||||||||||| || | ||||| ||||| || Sbjct 2221 CAAACACGCGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGT 2162 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 || || ||||| || ||||| || |||||||| |||||| || ||| ||||| Sbjct 2161 TAAACCCGGCATTAACCCACGTTTTTTCAACCAAAAAATCGCGCAAAAACTCCCCGAAAA 2102 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||||| || |||||| | ||||||||||| | ||||| ||| | || || | Sbjct 2101 AAATATCCCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAGTTTCGGAT---CC 2045 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | |||||||||| |||| | |||||||| || | ||| |||||||| || || Sbjct 2044 ATCAATCCATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATAGC 1985 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | |||||| | |||||| | ||| || | ||||| | || | | | || | Sbjct 1984 CCGAAATAACCGGTTTTTTTCAT-TAGAATCTTTAATATAAGATTCCAACAACAAACTAT 1926 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCATCGGGCTTCC 17317 ||||||| || || || ||||| || || || || ||||||||||| ||| || || || Sbjct 1925 ACATTTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCA-CGCGCCTCG 1867 Query 17318 GCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 || | ||| ||||| | || || || | || || |||||| ||||||||||| Sbjct 1866 GCGACTTGGACTTCTTTCATA-AACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGA 1808 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAACG 17434 |||||||||||| || | | || ||||||| | |||| | |||| |||| || Sbjct 1807 CGCGGCGAAAAAAGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGT-TAAG-GCG 1750 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | ||||| ||||| ||| |||||||||| ||||||||| || | Sbjct 1749 TCCCAGTGACGTTGATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCG 1690 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||||||||||| | ||| || | |||||| || ||||| Sbjct 1689 GCTTTTTTATACATTTCCCAGATTTGTGGGTATTGAATTGGGAA 1646 >seq3314 Length=31422 Score = 91.5 bits (100), Expect = 2e-13 Identities = 264/400 (66%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTC-TAGAGATATATTCTCCATGAAATCAAAAGGATT 16752 || |||||||| ||||| || ||||| || || || ||||| ||||||| ||||| Sbjct 22129 TTCTCGAAAAAATTAGTCTT-CCCTCGTAACGAAATCAATTCCATCCAATCAAACGGATT 22187 Query 16753 ---AGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAA 16809 |||| | | | ||||| | |||| ||| | | ||||||||||||||||| Sbjct 22188 CTGAGTACC---ATACATTTTGCCACATCCCAATTCTCCCAACAATCTATCCGCTACAAA 22244 Query 16810 TTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA-CGTACCGGAAGAGCTT 16868 || || ||||| | ||| | | | ||||||||| | ||| || | | || || | Sbjct 22245 CTCAATGTATTGACTCATAAGACCACCGTTCATTCCAACAAGCGCGCAAGGTAAC-GCGT 22303 Query 16869 CCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCT 16928 | | ||| | ||| || |||| || || || || | || | ||| | Sbjct 22304 CGCAAACAAACTCTCTCTCGATCTCAACTGCATCAGAAACGATGCCTTTTACGCCTTCTT 22363 Query 16929 CGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCT 16988 | | || | | || || ||| | | |||||| || || |||||||||| ||| | Sbjct 22364 CCGTTAGTTTGTTGTTTAGTAATTTGTATAGCAGACACGCAAAGTCGCAATGTAGTCCTT 22423 Query 16989 CGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTA 17048 ||||| ||| | |||||| || ||||| | || |||||| ||| || || |||| Sbjct 22424 TGTCTCGTGAGATCAATTCGTTTGAGAATGTTAGGCCTGGCATCAATCCGCGCTTTTTTA 22483 Query 17049 ACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||||||||||||| || || ||||| ||||| || Sbjct 22484 ACCAAAATATCGCGCAAAAGCTTCCTGAAAAAAATATCCC 22523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517415728401000