Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3314 102 8e-17 >seq3314 Length=31422 Score = 102 bits (112), Expect = 8e-17 Identities = 271/402 (67%), Gaps = 14/402 (3%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTC-TAAAGATATATTTTCCATAAAATCAAAGGGATT 15990 || ||||| || ||||| || ||||| ||| || || |||||| ||||||| ||||| Sbjct 22129 TTCTCGAAAAAATTAGTCTT-CCCTCGTAACGAAATCAATTCCATCCAATCAAACGGATT 22187 Query 15991 ---AGTAGCTGAAAATATCTTAGAGTACCCCAGTTC-CGTAACTAATCTATCTGCTACAA 16046 |||| | | | || || | |||| ||| | ||| |||||||| ||||||| Sbjct 22188 CTGAGTACC---ATACATTTTGCCACATCCCAATTCTCCCAAC-AATCTATCCGCTACAA 22243 Query 16047 ATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT-CGTACCGGAAGAGCT 16105 | || || ||||||| ||| | | | || ||||| | ||| || | | || || Sbjct 22244 ACTCAATGTATTGACTCATAAGACCACCGTTCATTCCAACAAGCGCGCAAGGTAAC-GCG 22302 Query 16106 TTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTT 16165 | | ||| | | || ||| |||| || || || ||| | | | | | | Sbjct 22303 TCGCAAACAAACTCTCTCTCGATCTCAACTGCATCAGAAACGATGCCTTTTACGCCTTCT 22362 Query 16166 TCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCT 16225 || | || | | |||||| ||| | | |||||||| |||||||||||||||||| Sbjct 22363 TCCGTTAGTTTGTTGTTTAGTAATTTGTATAGCAGACACGCAAAGTCGCAATGTAGTCCT 22422 Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 | ||||| ||| | |||||| || || |||| |||||||| ||| || || ||| Sbjct 22423 TTGTCTCGTGAGATCAATTCGTTTGAGAATGTTAGGCCTGGCATCAATCCGCGCTTTTTT 22482 Query 16286 AACCAGAATATCGCAGCAAATG-ACCCCGAAAAGAATATACC 16326 ||||| |||||||| ||||| | || ||||| ||||| || Sbjct 22483 AACCAAAATATCGC-GCAAAAGCTTCCTGAAAAAAATATCCC 22523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511286066949000