Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq945 260 2e-64 seq3314 161 1e-34 seq14165 95.1 1e-14 seq4091 95.1 1e-14 >seq945 Length=6199 Score = 260 bits (288), Expect = 2e-64 Identities = 609/910 (67%), Gaps = 14/910 (2%) Strand=Plus/Minus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||| || || || || || | ||| || ||||||||||| || || | || || || Sbjct 2509 TTTCTGATACTCCCCAACCCTTTTCTCAAAAAAATTAGTCTTCCCCTGCAACGAGATCAA 2450 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962 ||||| |||| | ||||| |||||||| ||| || | | ||||| | | Sbjct 2449 CTCCATCCAATCAAACGGATTCTGCACATTATACATTTTTGAATAACCCAACGCCCCCAA 2390 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 ||| ||||| |||||| |||| ||||| |||||| || | |||||| || | | Sbjct 2389 CAACCTATCCGCGACATACTCAATATAAACACTCATCAAATCCCCATTCATCCCAACCAA 2330 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | || | ||| | || || || ||| || || ||||||| ||||| Sbjct 2329 AGCACACGGCAACGCCTCGCAAACGAACTCCCTTTCGATGTTTACAGCGTCTGCGATAAT 2270 Query 24083 AGATCTTACTGTTTCTTCACTCGG-TGGATA--CAATAAA-TGTTTAAACATCAAACATG 24138 | |||| ||| |||||| | || ||| ||| ||| ||| |||||| | Sbjct 2269 CCCTTTTACGCGTTCCTCACTCAACTTCATTTTCAACAAACTGTATAA----CAAACACG 2214 Query 24139 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 24198 |||||||||| || | |||||||||||| || || ||||| |||||||| | || | Sbjct 2213 CGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTTAAACCCG 2154 Query 24199 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAAAATT 24257 |||||| ||||| ||||| | |||||| || | |||||| ||| ||||| || || Sbjct 2153 GCATTAACCCACGTTTTTTCAACCAAAAAATCG-CGCAAAAACTCCCCGAAAAAAATATC 2095 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCAC 24317 ||||| || ||||| || |||| | |||| | || || ||| ||||| Sbjct 2094 CCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAGTTTCGGATCCATCAATCCAT 2035 Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 || |||||| | ||| || || | |||||||| || || || ||||| ||| | Sbjct 2034 TTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATAGCCCGAAATAAC 1975 Query 24378 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 24437 ||||||||||||| |||||||| ||| | || | ||| | |||||||||||| ||| Sbjct 1974 CGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTATACATTTCAGAA 1915 Query 24438 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 24497 ||||| || ||||| || ||||| |||||||| || | ||||||| | || ||| Sbjct 1914 TGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCTCGGCGACTTGGACT 1855 Query 24498 TCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 ||| | ||| || | || | ||||| || || ||||| || || ||||| Sbjct 1854 TCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGACGCGGCGAAAAAA 1795 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT--CATTGA 24615 || | || || | || || | |||| | |||| | ||| | | ||| Sbjct 1794 GCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAGGCGTCCCAGTGACGTTG- 1736 Query 24616 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 24675 ||||| |||| ||| |||||||| | ||||||||||| || || || |||||||||| Sbjct 1735 -ATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGGCTTTTTTATACA 1677 Query 24676 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAA 24735 | | |||||| | | ||||||||||| || ||| |||| || ||| ||| ||| | Sbjct 1676 TTTCCCAGATTTGTGGGTATTGAATTGGGAACATACAGAATCGATCTGGGTTTGGTGCCA 1617 Query 24736 GGATTGGTTC 24745 | |||||| Sbjct 1616 AAAGTGGTTC 1607 >seq3314 Length=31422 Score = 161 bits (178), Expect = 1e-34 Identities = 291/422 (69%), Gaps = 10/422 (2%) Strand=Plus/Plus Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||||| | ||||||| ||||||||||| ||||| || || || || |||||| | Sbjct 22876 ATCCACTTAAGCGCCCAATTGGCCTTCTTTTGAACACACGGAATAGTTTCAATAGCACGA 22935 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG---ACTATAC 24428 || || | | |||||| || ||| |||| ||| | || |||||| ||||||| Sbjct 22936 AACAGCCTGCTCTTTTCACTAGAATCCTTAATATAAGATTC---CAAAAGCAAACTATAC 22992 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 24488 ||||||||||| || || |||||||| || ||||| ||||| ||| | ||||||| Sbjct 22993 ATTTCCGAATGGATATTCTCAATGGCAATCTGAAACCCGTAAAAAGCACGTGCCTCGGCG 23052 Query 24489 ATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 ||||||| ||| | ||| | | || |||||||| || ||||| || || Sbjct 23053 ATCTGTATCTCTTTCATAAACCTTGAAGCCAAATTTTCCAAAACAATTCCATCTGATGCG 23112 Query 24549 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 24608 || ||||| || | || || | | || | |||| | ||||| | || Sbjct 23113 GCGAAAAATGCGAGAACGTGAGTCACGAAGTGACGTTCGCCGTCTGTTAACGACTCGTAA 23172 Query 24609 T--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | ||| |||| |||| ||| |||||||| ||||||||||||| || || || | Sbjct 23173 TGACGTTG--GTCTTGCGATAAATCGACTTCTTCTGCTGTCCAAAATGAGGCTTCGGCTT 23230 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 24726 |||| ||||| | ||| || | | ||||| |||||||| || ||||| | ||||| Sbjct 23231 TTTTGTACATTTCCCAAATTTGTGGGTATTGGATTGGAAACATGCAGAATCTGTCTGGAT 23290 Query 24727 TT 24728 || Sbjct 23291 TT 23292 >seq14165 Length=56756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | ||| ||||| || || || |||||| | | || | | | | Sbjct 34799 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 34858 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || |||| || | | || || ||||| | |||||| || || || || | ||||||| Sbjct 34859 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 34918 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||| ||||||||||| || | ||| || || |||| | || ||| | || | Sbjct 34919 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 34978 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| |||||||| | | || |||||| || || || ||||| Sbjct 34979 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 35025 >seq4091 Length=20028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | ||| ||||| || || || |||||| | | || | | | | Sbjct 16516 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 16575 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || |||| || | | || || ||||| | |||||| || || || || | ||||||| Sbjct 16576 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 16635 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||| ||||||||||| || | ||| || || |||| | || ||| | || | Sbjct 16636 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 16695 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| |||||||| | | || |||||| || || || ||||| Sbjct 16696 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 16742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593572612986000