Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq13411 113 4e-20 seq5340 113 4e-20 seq16550 93.3 4e-14 seq10926 93.3 4e-14 seq4586 87.8 2e-12 >seq13411 Length=19963 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| || || |||||||| || ||| ||| ||| || Sbjct 11259 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 11318 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | || | || || ||| || |||||||| | || ||| Sbjct 11319 TCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGAC 11378 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| | | |||||||| ||||||||||| ||||| || || | ||||| ||| Sbjct 11379 CAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTAC 11438 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || || ||||| |||||||| |||| ||||| ||||| || || Sbjct 11439 AATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGG 11488 >seq5340 Length=22833 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| || || |||||||| || ||| ||| ||| || Sbjct 14492 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 14433 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | || | || || ||| || |||||||| | || ||| Sbjct 14432 TCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGAC 14373 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| | | |||||||| ||||||||||| ||||| || || | ||||| ||| Sbjct 14372 CAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTAC 14313 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || || ||||| |||||||| |||| ||||| ||||| || || Sbjct 14312 AATATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGG 14263 >seq16550 Length=20979 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||| || ||||| || || || ||| | Sbjct 17674 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAAACAATCACTTTAGAGGTTGAAAGTTCT 17615 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| || ||| ||||||||||| | || ||| || Sbjct 17614 GATACGATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCACCAGACCAG 17555 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| ||||||||||| || |||||||| |||||| ||| |||| || ||||| Sbjct 17554 CAAAGGCTTATCTTTGCAGGAAAACAACTCGAAGATGGGCGTACTTTGGCAGACTACAAC 17495 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || |||||||| ||||| |||||| |||| Sbjct 17494 ATCCAGAAGGAGTCTACCCTTCACTTGGT 17466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||| || || |||||||| || ||| | || Sbjct 18358 ATGCAGATCTTTGTCAAGACGTTGACAGGAAAGACCATTACTTTGGAGGTCGAAAGCTCA 18299 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || ||| ||||| ||||| | || ||| || Sbjct 18298 GACACAATCGATAATGTTAAGGCGAAGATTCAAGATAAGGAAGGGATCCCACCAGACCAG 18239 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || ||||| ||||| ||||| || ||| || || |||| ||||| || Sbjct 18238 CAGAGATTGATTTTTGCTGGCAAGCAACTCGAGGATGGCAGGACCTTGGCAGATTATAAC 18179 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| ||||| ||| |||| Sbjct 18178 ATCCAGAAGGAATCAACTCTGCACTTGGT 18150 >seq10926 Length=11099 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||| || ||||| || || || ||| | Sbjct 8254 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAAACAATCACTTTAGAGGTTGAAAGTTCT 8195 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| || ||| ||||||||||| | || ||| || Sbjct 8194 GATACGATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCACCAGACCAG 8135 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| ||||||||||| || |||||||| |||||| ||| |||| || ||||| Sbjct 8134 CAAAGGCTTATCTTTGCAGGAAAACAACTCGAAGATGGGCGTACTTTGGCAGACTACAAC 8075 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || |||||||| ||||| |||||| |||| Sbjct 8074 ATCCAGAAGGAGTCTACCCTTCACTTGGT 8046 >seq4586 Length=18721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 28954 GTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGG 29013 || || | ||||| ||||| | ||||| ||||| || || ||||| || ||| || Sbjct 14115 GTTTACAGATGCAGATATTTGTGAAAACTTTGACTGGAAAGACCATCACTCTCGAGGTGG 14056 Query 29014 AACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCG 29073 | | | || || | | | || ||||| || ||| || |||||||| | ||| Sbjct 14055 AGAGCTCTGACACCATTGACAATGTTAAGGCCAAGATTCAAGACAAAGAAGGGATTCCCC 13996 Query 29074 TAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCG 29133 |||||| || || || |||||||| || ||||| || || || || | || | Sbjct 13995 CAGATCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTTGAGGACGGTCGTACCCTTGCTG 13936 Query 29134 ATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 | ||||| |||||||||||||| || |||||| ||||| | || || Sbjct 13935 ACTACAACATTCAGAAGGAATCGACCCTTCACTTGGTGCTTCGTTT 13890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428231201574125