Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq16550 89.7 4e-13 seq10926 89.7 4e-13 seq14670 87.8 1e-12 seq6802 87.8 1e-12 seq6637 87.8 1e-12 >seq16550 Length=20979 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||| || ||||| || || || ||| | Sbjct 17674 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAAACAATCACTTTAGAGGTTGAAAGTTCT 17615 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || ||||| || ||| ||||||||||| | || ||| || Sbjct 17614 GATACGATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCACCAGACCAG 17555 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| ||||||||||| || |||||| | |||||| ||| |||| || ||||| Sbjct 17554 CAAAGGCTTATCTTTGCAGGAAAACAACTCGAAGATGGGCGTACTTTGGCAGACTACAAC 17495 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || ||||| ||||| |||||| |||| Sbjct 17494 ATCCAGAAGGAGTCTACCCTTCACTTGGT 17466 >seq10926 Length=11099 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||| || ||||| || || || ||| | Sbjct 8254 ATGCAGATTTTTGTCAAGACGTTGACCGGAAAAACAATCACTTTAGAGGTTGAAAGTTCT 8195 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || ||||| || ||| ||||||||||| | || ||| || Sbjct 8194 GATACGATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAAGGAATCCCACCAGACCAG 8135 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| ||||||||||| || |||||| | |||||| ||| |||| || ||||| Sbjct 8134 CAAAGGCTTATCTTTGCAGGAAAACAACTCGAAGATGGGCGTACTTTGGCAGACTACAAC 8075 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || ||||| ||||| |||||| |||| Sbjct 8074 ATCCAGAAGGAGTCTACCCTTCACTTGGT 8046 >seq14670 Length=61898 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||||||| | || ||||| || |||||||| |||||| | ||| | || ||| Sbjct 32012 GATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGATGGAAGAACACTTGCTGAT 31953 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||||||||| || ||||| | || || |||| |||| || Sbjct 31952 TACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGATTGAGAGGTGG 31900 >seq6802 Length=18417 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||||||| | || ||||| || |||||||| |||||| | ||| | || ||| Sbjct 11172 GATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGATGGAAGAACACTTGCTGAT 11231 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||||||||| || ||||| | || || |||| |||| || Sbjct 11232 TACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGATTGAGAGGTGG 11284 >seq6637 Length=15695 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||||||| | || ||||| || |||||||| |||||| | ||| | || ||| Sbjct 3884 GATCAACAAAGATTGATATTTGCTGGGAAACAATTAGAAGATGGAAGAACACTTGCTGAT 3943 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||||||||| || ||||| | || || |||| |||| || Sbjct 3944 TACAATATCCAAAAGGAATCGACGCTTCATCTCGTTTTGAGATTGAGAGGTGG 3996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410696292786050