Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq8384 109 6e-19 seq7910 109 6e-19 seq4675 109 6e-19 seq16550 89.7 6e-13 seq16006 86.0 7e-12 seq6541 82.4 9e-11 seq5280 82.4 9e-11 seq1845 82.4 9e-11 >seq8384 Length=24589 Score = 109 bits (120), Expect = 6e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| |||| |||||| ||||| ||||||||||| || || || | || || Sbjct 3794 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCA 3735 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| || | | ||||||||| | || | | || |||||| | Sbjct 3734 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGG 3675 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 || || |||| | | | ||||| |||| || || || | ||||||||| Sbjct 3674 ATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCTC---TCGACTTCCAAAGTGATGGTT 3618 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| |||||||| ||||| Sbjct 3617 TTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 3586 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| |||||||| |||| || || |||| || |||||||| ||||| || Sbjct 3548 TCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAG 3489 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | | ||||||||| | || | | || ||||| |||||| || | | Sbjct 3488 ATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTA 3429 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | ||||| |||| || || |||| ||||||||||| || || || ||||| Sbjct 3428 TCGATAGTGTCAGAGCTC---TCGACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTTA 3372 Query 43170 ACAAAGATTTGCATTTTT 43187 |||||||| ||||| ||| Sbjct 3371 ACAAAGATCTGCATATTT 3354 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||| || || |||| | || || || || |||||||| || Sbjct 4233 CTCCTTCTGAATGTTGTAATCGGCAAGCGTCCTACCATCTTCCAGTTGTTTACCAGCAAA 4174 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 ||| | | ||||||||| | || | | |||||| ||| ||| | || | |||| Sbjct 4173 TATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCC-TGAATCTTGGCCTTGACAT 4115 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || ||||||||| || | ||||||||||| || || | || || | Sbjct 4114 TATCAATAGTATCAGACGATTCCACCTCCAAAGTGATGGTTTTCCCTGTCAAGGTTTTAA 4055 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 4054 CAAAGATCTGCAT 4042 >seq7910 Length=9655 Score = 109 bits (120), Expect = 6e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| |||| |||||| ||||| ||||||||||| || || || | || || Sbjct 2030 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCA 1971 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| || | | ||||||||| | || | | || |||||| | Sbjct 1970 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGG 1911 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 || || |||| | | | ||||| |||| || || || | ||||||||| Sbjct 1910 ATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCTC---TCGACTTCCAAAGTGATGGTT 1854 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| |||||||| ||||| Sbjct 1853 TTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 1822 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| |||||||| |||| || || |||| || |||||||| ||||| || Sbjct 1784 TCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAG 1725 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | | ||||||||| | || | | || ||||| |||||| || | | Sbjct 1724 ATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTA 1665 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | ||||| |||| || || |||| ||||||||||| || || || ||||| Sbjct 1664 TCGATAGTGTCAGAGCTC---TCGACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTTA 1608 Query 43170 ACAAAGATTTGCATTTTT 43187 |||||||| ||||| ||| Sbjct 1607 ACAAAGATCTGCATATTT 1590 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||| || || |||| | || || || || |||||||| || Sbjct 2469 CTCCTTCTGAATGTTGTAATCGGCAAGCGTCCTACCATCTTCCAGTTGTTTACCAGCAAA 2410 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 ||| | | ||||||||| | || | | |||||| ||| ||| | || | |||| Sbjct 2409 TATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCC-TGAATCTTGGCCTTGACAT 2351 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || ||||||||| || | ||||||||||| || || | || || | Sbjct 2350 TATCAATAGTATCAGACGATTCCACCTCCAAAGTGATGGTTTTCCCTGTCAAGGTTTTAA 2291 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 2290 CAAAGATCTGCAT 2278 >seq4675 Length=16269 Score = 109 bits (120), Expect = 6e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| |||| |||||| ||||| ||||||||||| || || || | || || Sbjct 16181 ACCAAATGCAGTGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCA 16122 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| || | | ||||||||| | || | | || |||||| | Sbjct 16121 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGG 16062 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 || || |||| | | | ||||| |||| || || || | ||||||||| Sbjct 16061 ATCTTAGCCTTGACGTTATCGATTGTGTCAGAGCTC---TCGACTTCCAAAGTGATGGTT 16005 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| |||||||| ||||| Sbjct 16004 TTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 15973 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| |||||||| |||| || || |||| || |||||||| ||||| || Sbjct 15935 TCCTTTTGAATGTTGTAATCGGCCAAGGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAG 15876 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | | ||||||||| | || | | || ||||| |||||| || | | Sbjct 15875 ATCAACCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCTTGGATTTTCGCCTTAACATTA 15816 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | ||||| |||| || || |||| ||||||||||| || || || ||||| Sbjct 15815 TCGATAGTGTCAGAGCTC---TCGACTTCGAGAGTGATGGTTTTACCAGTAAGAGTCTTA 15759 Query 43170 ACAAAGATTTGCATTTTT 43187 |||||||| ||||| ||| Sbjct 15758 ACAAAGATCTGCATATTT 15741 >seq16550 Length=20979 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| || |||||||||||| ||||||||||| || || ||| | || || Sbjct 17922 ACCAAATGCAGAGTCGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCA 17981 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| ||||| || || || | ||| ||||| | || | | ||||| | | || Sbjct 17982 AGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTAT-CTTG 18040 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 | | |||| |||| | | | || || ||| ||| || || | |||||||| Sbjct 18041 AATCTTTGCCTTGACATTATCAATAGTATCCGAGCT---TTCAACCTCCAAAGTGATGGT 18097 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || | || |||||||| || ||||| Sbjct 18098 TTTCCCTGTCAAAGTTTTTACAAAAATCTGCAT 18130 >seq16006 Length=16259 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||||||||||||| ||| ||||| || ||||| || ||||| |||| | || || Sbjct 13243 ACCAAATGCAATGTGGACTCTTTTTGGATGTTGTAGTCGGCCAGGGTCCTGCCATCCTCG 13184 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| ||||| || || | | |||||||| | ||| | | || || || | Sbjct 13183 AGTTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGCGGGATCCCTTCTTTATCTTGG 13124 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 || ||| |||| ||| | | | ||||| ||| ||| || || | |||||||| Sbjct 13123 ATCTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCT---TTCGACCTCCAAAGTGATGGT 13068 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | ||||| || ||||||||||| Sbjct 13067 CTTCCCTGTCAAAGTCTTGACGAAGATTTGCAT 13035 >seq6541 Length=11167 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || | || | || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 792 AAAAAATTACGCCGCTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 733 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 732 TTACCACTATACTAC 718 >seq5280 Length=29361 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||||||||| || || || |||| || |||||||| ||||| || Sbjct 6735 CTCTTTCTGGATGTTGTAATCAGCAAGGGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAA 6676 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | || ||||||||| ||| || || | | Sbjct 6675 AATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTAACATT 6616 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || || | ||||||||||| || || | ||||| Sbjct 6615 ATCGATTGTGTCAGAGCTC---TCGACCTCCAAAGTGATGGTTTTCCCTGTCAAAGTCTT 6559 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 6558 GACAAAGATCTGCAT 6544 >seq1845 Length=6980 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || |||| |||| | || || ||||||||||||||||| Sbjct 3782 CTCCTTTTGGATGTTGTAGTCTGCCAAGGTCCTGCCATCCTCAAGCTGCTTACCAGCGAA 3841 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | |||||| || | || | | ||||||||| ||| || |||| ||| Sbjct 3842 AATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGT 3900 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| ||| || || | |||||||| || || || | ||||| Sbjct 3901 TGTCAATGGTGTCAGAGCT---TTCGACCTCCAAAGTGATGGTCTTTCCGGTCAACGTCT 3957 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||| ||||| Sbjct 3958 TGACGAAGATCTGCAT 3973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571674109521000