Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq14670 116 6e-21 seq6802 116 6e-21 seq6637 116 6e-21 seq6710 104 3e-17 seq16006 91.5 2e-13 seq16550 89.7 8e-13 seq8889 84.2 3e-11 >seq14670 Length=61898 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||||||| | ||| || || | ||| | || ||||| || ||||| ||||| Sbjct 31897 GTTCCACCTCTCAATCTCAAAACGAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCA 31956 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||| | ||| ||||||||||| |||||||| ||||||||||| ||||| || Sbjct 31957 GCAAGTGTTCTTCCATCTTCTAATTGTTTCCCAGCAAATATCAATCTTTGTTGATCAGGC 32016 Query 146168 GGAATTCCTTCTTTATC 146184 |||||||| ||||| || Sbjct 32017 GGAATTCCCTCTTTGTC 32033 >seq6802 Length=18417 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||||||| | ||| || || | ||| | || ||||| || ||||| ||||| Sbjct 11287 GTTCCACCTCTCAATCTCAAAACGAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCA 11228 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||| | ||| ||||||||||| |||||||| ||||||||||| ||||| || Sbjct 11227 GCAAGTGTTCTTCCATCTTCTAATTGTTTCCCAGCAAATATCAATCTTTGTTGATCAGGC 11168 Query 146168 GGAATTCCTTCTTTATC 146184 |||||||| ||||| || Sbjct 11167 GGAATTCCCTCTTTGTC 11151 >seq6637 Length=15695 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||||||| | ||| || || | ||| | || ||||| || ||||| ||||| Sbjct 3999 GTTCCACCTCTCAATCTCAAAACGAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCA 3940 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||| | ||| ||||||||||| |||||||| ||||||||||| ||||| || Sbjct 3939 GCAAGTGTTCTTCCATCTTCTAATTGTTTCCCAGCAAATATCAATCTTTGTTGATCAGGC 3880 Query 146168 GGAATTCCTTCTTTATC 146184 |||||||| ||||| || Sbjct 3879 GGAATTCCCTCTTTGTC 3863 >seq6710 Length=13574 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || | |||| ||| | || || || || || || || ||| Sbjct 2923 GTTCCTCCCCTAAGCCTAAGAACCAGATGAAGCGTTGACTCCTTCTGGATGTTGTAGTCT 2864 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| || || ||||| ||||||||||||||||| ||||| |||||| Sbjct 2863 GCAAGAGTTCGACCATCCTCCAACTGTTTCCCAGCAAAAATCAATCTCTGCTGGTCCGGA 2804 Query 146168 GGAATTCCTTCTTTATC 146184 ||||| |||||||| || Sbjct 2803 GGAATGCCTTCTTTGTC 2787 >seq16006 Length=16259 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||||||| || || || ||||| || || || || | || || |||| ||| || Sbjct 13244 TACCAAATGCAATGTGGACTCTTTTTGGATGTTGTAGTCGGCCAGGGTCCTGCCATCCTC 13185 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| || |||||||||||||| |||||||| || || || || |||||||||||||| Sbjct 13184 GAGTTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGCGGGATCCCTTCTTTATCTTG 13125 >seq16550 Length=20979 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||||| || | ||| ||||| || || |||||||||| Sbjct 18132 CCACCACGAAGACGAAGGACCAAGTGCAGAGTTGATTCCTTCTGGATGTTATAATCTGCC 18191 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || |||| ||| || | ||| || ||||||||||||||||| ||||| || || || Sbjct 18192 AAGGTCCTGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGG 18251 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 18252 ATCCCTTCCTTATCTTG 18268 Score = 86.0 bits (94), Expect = 9e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 146063 CTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCT 146121 || || || | ||| | || ||||| ||| || ||||| || |||| || || |||| Sbjct 18372 CTCAACACAAGATGGAGGGTTGATTCCTTTTGA-ATATTGTAGTCTGCCAGGGTCCTGCC 18430 Query 146122 ATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTT 146181 ||| || | || ||||||||||| ||||| ||||||||||| || || || |||||||| Sbjct 18431 ATCCTCGAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGATCTGGGGGGATACCTTCTTT 18490 Query 146182 ATCTTG 146187 ||||| Sbjct 18491 GTCTTG 18496 >seq8889 Length=9065 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | |||| ||| | ||||| || || || |||||||| | Sbjct 2072 TTCCACCACGAAGACGAAGAACCAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCGG 2013 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| | | ||| || | ||||| |||||||||||||| || ||||| || || | Sbjct 2012 CCAAAGTACGTCCATCCTCAAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTG 1953 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| |||||||| Sbjct 1952 GAATTCCTTCCTTATCTTG 1934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743339821344000