Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5280 100 2e-16 seq13106 95.1 8e-15 seq8473 95.1 8e-15 seq8889 91.5 1e-13 seq8384 89.7 3e-13 seq7910 89.7 3e-13 seq4675 89.7 3e-13 seq16550 87.8 1e-12 seq10926 87.8 1e-12 seq16006 84.2 1e-11 >seq5280 Length=29361 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || ||||| || | ||| |||||||| |||||||| || | || ||| |||| Sbjct 6755 AGAACCAGATGGAGGGTAGACTCTTTCTGGATGTTGTAATCAGCAAGGGTACGTCCGTCC 6696 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || ||||| | || ||||||||| ||| | || |||||||| Sbjct 6695 TCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 6636 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC---GAT-TCGACGTCCACCGTGAT 34353 ||||| ||| | || |||||| | ||| | | ||||| |||| ||||| Sbjct 6635 TGGATCTTGGCCTTAACAT----TATCGATTGTGTCAGAGCTCTCGACCTCCAAAGTGAT 6580 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| || || | ||| || |||||||||||||| Sbjct 6579 GGTTTTCCCTGTCAAAGTCTTGACAAAGATCTGCAT 6544 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||||||||| || || | || ||| || || || |||||||| | | Sbjct 6542 CCTCCCCTCAACCTCAGCACAAGATGGAGGGTCGATTCCTTTTGGATATTGTAGTCTGCC 6483 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || || | |||||| || || || ||||||| ||||||||| ||| Sbjct 6482 AATGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 6423 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| || || ||| | || | || | ||| | ||||| Sbjct 6422 ATCCCTTCCTTGTCTTGGATTTTCGCCTTAACATTATCGATGGTATCTGAGCTCTCGACT 6363 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || ||||||||||| |||||||||||||| Sbjct 6362 TCAAGAGTGATGGTCTTACCAGTGAGAGTTTTAACAAAGATCTGCAT 6316 >seq13106 Length=76417 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || || || | ||| || ||||| ||||||||||||| Sbjct 56354 CCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCG 56295 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| ||||| || ||||||||| || Sbjct 56294 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGTGGG 56235 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | || | |||| || || || Sbjct 56234 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCGGAAGACTCAACC 56175 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || || |||||||| ||||||||||| Sbjct 56174 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 56128 >seq8473 Length=8692 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || || || | ||| || ||||| ||||||||||||| Sbjct 5354 CCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCG 5413 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| ||||| || ||||||||| || Sbjct 5414 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGTGGG 5473 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | || | |||| || || || Sbjct 5474 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCGGAAGACTCAACC 5533 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || || |||||||| ||||||||||| Sbjct 5534 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 5580 >seq8889 Length=9065 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | ||||| ||||| | ||| || ||||| |||||||| || Sbjct 2300 AAGCCACCACGAAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCA 2241 Query 34220 GACAGCTGACGGTCG-TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | || || | ||| || ||||| || || || || || ||||||| ||||||||| Sbjct 2240 GCAAG-TGTCCGTCCATCTTCCAATTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGG 2182 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | | |||||| || ||||| ||| | || | | || | ||| | || || Sbjct 2181 TGGGATCCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTC 2122 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||||||||| || || | |||||| ||||| |||||||| Sbjct 2121 CACCTCCAAAGTGATGGTTTTTCCTGTCAAAGTTTTAACAAA-ATCTGCAT 2072 >seq8384 Length=24589 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || | || ||| | || || | ||||||||| |||||| Sbjct 3776 TCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAA 3717 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| ||| | | || ||||| ||||| ||| | | Sbjct 3716 ATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACGT-- 3659 Query 34319 GCTATCGAATCGGTC---GAT-TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 |||||| | ||| | | ||||| |||| ||||||||||| || |||||||| || Sbjct 3658 --TATCGATTGTGTCAGAGCTCTCGACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTT 3601 Query 34375 CACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 3600 AACAAAGATCTGCAT 3586 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | ||||| ||||| | || || ||||| |||||||| ||| Sbjct 4271 AACCCACCACGAAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCG 4212 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | ||| | | || |||| || || || || || || | || ||||||||| Sbjct 4211 GCAAGCGTCCTACCATCTTCCAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGT 4152 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | |||||| || ||||| ||| | || | || | ||| | |||||| Sbjct 4151 GGGATCCCCTCCTTATCCTGAATCTTGGCCTTGACATTATCAATAGTATCAGACGATTCC 4092 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||||||||| || || | ||||| |||||||||||||| Sbjct 4091 ACCTCCAAAGTGATGGTTTTCCCTGTCAAGGTTTTAACAAAGATCTGCAT 4042 >seq7910 Length=9655 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || | || ||| | || || | ||||||||| |||||| Sbjct 2012 TCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAA 1953 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| ||| | | || ||||| ||||| ||| | | Sbjct 1952 ATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACGT-- 1895 Query 34319 GCTATCGAATCGGTC---GAT-TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 |||||| | ||| | | ||||| |||| ||||||||||| || |||||||| || Sbjct 1894 --TATCGATTGTGTCAGAGCTCTCGACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTT 1837 Query 34375 CACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 1836 AACAAAGATCTGCAT 1822 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | ||||| ||||| | || || ||||| |||||||| ||| Sbjct 2507 AACCCACCACGAAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCG 2448 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | ||| | | || |||| || || || || || || | || ||||||||| Sbjct 2447 GCAAGCGTCCTACCATCTTCCAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGT 2388 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | |||||| || ||||| ||| | || | || | ||| | |||||| Sbjct 2387 GGGATCCCCTCCTTATCCTGAATCTTGGCCTTGACATTATCAATAGTATCAGACGATTCC 2328 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||||||||| || || | ||||| |||||||||||||| Sbjct 2327 ACCTCCAAAGTGATGGTTTTCCCTGTCAAGGTTTTAACAAAGATCTGCAT 2278 >seq4675 Length=16269 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || | || ||| | || || | ||||||||| |||||| Sbjct 16163 TCCTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCCTCAAGCTGCTTGCCAGCGAAA 16104 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| ||| | | || ||||| ||||| ||| | | Sbjct 16103 ATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACGT-- 16046 Query 34319 GCTATCGAATCGGTC---GAT-TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 |||||| | ||| | | ||||| |||| ||||||||||| || |||||||| || Sbjct 16045 --TATCGATTGTGTCAGAGCTCTCGACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTT 15988 Query 34375 CACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 15987 AACAAAGATCTGCAT 15973 >seq16550 Length=20979 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| |||||||| || | || || | || Sbjct 17235 AGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGTGTGCGTCCATCT 17294 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| || || ||||||||||| | || ||||||||| || | | |||||| || Sbjct 17295 TCCAATTGTTTCCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCC 17354 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | |||| ||| | || || || |||| || |||||| Sbjct 17355 TGTATCTTGGCCTTGACATTATCAATCGTATCTGAAGACTCCACCTCCAAAGTAATGGTT 17414 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || || ||||||||||||||| Sbjct 17415 TTTCCAGTCAACGTCTTGACAAAGATCTGCATC 17447 >seq10926 Length=11099 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| |||||||| || | || || | || Sbjct 7815 AGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGTGTGCGTCCATCT 7874 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| || || ||||||||||| | || ||||||||| || | | |||||| || Sbjct 7875 TCCAATTGTTTCCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCC 7934 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | |||| ||| | || || || |||| || |||||| Sbjct 7935 TGTATCTTGGCCTTGACATTATCAATCGTATCTGAAGACTCCACCTCCAAAGTAATGGTT 7994 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | || || ||||||||||||||| Sbjct 7995 TTTCCAGTCAACGTCTTGACAAAGATCTGCATC 8027 >seq16006 Length=16259 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||||||||||| || | ||| |||||||| || |||||||| | Sbjct 13489 CCACCCCTCAACCTCAGCACCAAATGAAGGGTAGACTCTTTCTGGATATTGTAGTCTGCT 13430 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | ||| || ||||| || || |||| |||||||| | |||| Sbjct 13429 AGAGTACGCCCATCTTCGAGCTGTTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGCGGG 13370 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| || || ||||| ||| | | | | |||| ||| | ||| || Sbjct 13369 -ATCCCCTCTTTATCCTGAATCTTAGCCTTGACGTTGTCAATCGTATCAGAACTTTCAAC 13311 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| || || | ||||||||||| |||||||| Sbjct 13310 CTCTAAAGTGATGGTTTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 13263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322992955892000