Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq945 194 2e-44 seq3314 123 2e-23 >seq945 Length=6199 Score = 194 bits (214), Expect = 2e-44 Identities = 586/895 (65%), Gaps = 19/895 (2%) Strand=Plus/Minus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||| ||||| || ||| ||| ||||| || | ||| || || ||||| ||||| || || Sbjct 2527 ATTCGACATCACCGACGCTTTCTGATACTCCCCAACCCTTTTCTCAAAAAAATTAGTCTT 2468 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATC 16044 || | || || || ||||| ||||||| ||||| | | ||| || || | Sbjct 2467 CCCCTGCAACGAGATCAACTCCATCCAATCAAACGGATTCT--GCACATTATACATTTTT 2410 Query 16045 GCAT--CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAA 16102 | || ||||| || ||| || |||||||| ||| | || ||||| |||| ||| Sbjct 2409 GAATAACCCAACGCCCCCAACAACCTATCCGCGACATACTCAATATAAACACTCATCAAA 2350 Query 16103 TCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATA 16162 || | ||||| || | || | || | || || | || | |||| || Sbjct 2349 TCCCCATTCATCCCAACCAAAGCACACGGCAACGCCTCGCAAACGAACTCCCTTTCGATG 2290 Query 16163 TTAACCGCTTCAATGATTATATCTCTTAC---TACACTATTTAACGGAGGGTTTAATAAG 16219 || || || || ||| || || |||| | | | | ||| || || || Sbjct 2289 TTTACAGCGTCTGCGATAATCCCTTTTACGCGTTCCTCACTCAACTTCATTTTCAACAAA 2230 Query 16220 -TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278 ||| ||| | ||| || ||||| |||||||| || ||||| || ||| ||||| Sbjct 2229 CTGTATAACAA----ACACGCGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTC 2174 Query 16279 GTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAA 16338 ||||||||| || | ||| ||||||| || |||||||| | |||||| || ||| ||| Sbjct 2173 GTTTGAAAACGTTAAACCCGGCATTAACCCACGTTTTTTCAACCAAAAAATCGCGCAAAA 2114 Query 16339 TGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT 16398 || ||||| ||||| ||||| || ||||| || | | || || || | || Sbjct 2113 ACTCCCCGAAAAAAATATCCCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAGT 2054 Query 16399 TCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCAT 16458 | | | || |||||||| |||||| || ||||||| | |||||| || Sbjct 2053 T---TCGGATCCATCAATCCATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAAT 1997 Query 16459 GTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTAT 16518 | || || || |||||| |||||||| || |||| |||||||| || | Sbjct 1996 CGTTTCAATAGCCCGAAATAACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAA 1937 Query 16519 TAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA-GC 16577 | |||||||||||||| |||||||||||||| || || || || || || ||||| || Sbjct 1936 CAACAAACTATACATTTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGC 1877 Query 16578 ATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTA 16637 | | || |||| | ||| ||||| ||||| | || | ||||||| ||| | Sbjct 1876 A-CGCGCCTCGGCGACTTGGACTTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGA 1818 Query 16638 TTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTG 16697 | || || || || ||||| || || | ||| |||| || | |||| || | Sbjct 1817 TGCCGTCTGACGCGGCGAAAAAAGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGG 1758 Query 16698 -AAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756 ||| | ||||| | ||||| ||||||||||| ||||| | |||||||| Sbjct 1757 TTAAGGCGT-CCCAGTGACGTTGATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAAT 1699 Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 || || | || ||||||||||||| ||| || | | ||| ||| || |||| Sbjct 1698 GAGGCTTCGGCTTTTTTATACATTTCCCAGATTTGTGGGTATTGAATTGGGAACA 1644 >seq3314 Length=31422 Score = 123 bits (136), Expect = 2e-23 Identities = 289/435 (66%), Gaps = 6/435 (1%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| || ||| || ||||| || | |||||||| || || ||||| || || ||| Sbjct 22093 GACATCACAGACGCCTTCTGATACTCCCCGACTCTCTTCTCGAAAAAATTAGTCTTCCCT 22152 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 ||| ||||| |||||| ||||||| ||||| | | || ||| ||| | ||| Sbjct 22153 CGTAACGAAATCAATTCCATCCAATCAAACGGATTCTGAGTACCATACATTTTGCCACAT 22212 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 |||||||| ||| ||||||||||| ||||| || || || || |||| | | ||| | Sbjct 22213 CCCAATTCTCCCAACAATCTATCCGCTACAAACTCAATGTATTGACTCATAAGACCACCG 22272 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 |||||||| | | ||| | || || | ||| | | | || || | ||| Sbjct 22273 TTCATTCCAACAAGCGCGCAAGGTAACGCGTCGCAAACAAACTCTCTCTCGATCTCAACT 22332 Query 16169 GCTTCAATGATTATATCTCTTA---CTACACTATTTAACGGAGGGTTTAATAAGTGTTTA 16225 || ||| | || || ||| || | ||| ||||| ||| ||| Sbjct 22333 GCATCAGAAACGATGCCTTTTACGCCTTCTTCCGTTAGTTTGTTGTTTAGTAA---TTTG 22389 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 | | | ||| ||||| || ||||| | ||||| ||| | || || |||||||| Sbjct 22390 TATAGCAGACACGCAAAGTCGCAATGTAGTCCTTTGTCTCGTGAGATCAATTCGTTTGAG 22449 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 ||||| || |||||||| | ||| || ||||| | ||||||||| ||| ||| || Sbjct 22450 AATGTTAGGCCTGGCATCAATCCGCGCTTTTTTAACCAAAATATCGCGCAAAAGCTTCCT 22509 Query 16346 GAAAAGAATATACCT 16360 ||||| ||||| ||| Sbjct 22510 GAAAAAAATATCCCT 22524 Score = 104 bits (114), Expect = 2e-17 Identities = 213/315 (68%), Gaps = 14/315 (4%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||||| || | || |||||||||||||| ||||| |||||||| || || ||||| Sbjct 22965 AATATAAGATTCCAAAAGCAAACTATACATTTCCGAATGGATATTCTCAATGGCAATCTG 23024 Query 16564 AAAACCAT-AAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTA 16622 ||| || | ||||||| | || |||| || |||| || ||||||| || | Sbjct 23025 AAACCCGTAAAAAGCA-CGTGCCTCGGCGATCTGTATCTCTTTCATAAACCTTGAAGCCA 23083 Query 16623 AGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAt 16682 | ||||| ||| |||||||| || || ||||| || || | ||| | | || | Sbjct 23084 AATTTTCCAAAACAATTCCATCTGATGCGGCGAAAAATGCGAGAACGTGAGTCACGAAGT 23143 Query 16683 ttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAA------TCTTTTGATAAATCGA 16736 |||| |||| ||||| | || || | |||| |||||||||| Sbjct 23144 GACGTTCGCCGTCTG------TTAACGACTCGTAATGACGTTGGTCTTGCGATAAATCGA 23197 Query 16737 CCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGT 16796 | |||||| | |||||||| || || | || ||||| ||||||| ||| || | | || Sbjct 23198 CTTCTTCTGCTGTCCAAAATGAGGCTTCGGCTTTTTTGTACATTTCCCAAATTTGTGGGT 23257 Query 16797 AAACAATAGGAAACA 16811 | || ||||||| Sbjct 23258 ATTGGATTGGAAACA 23272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462395938395000