Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq4586 98.7 8e-16 seq13106 96.9 3e-15 seq8473 96.9 3e-15 seq10926 86.0 5e-12 seq8384 84.2 2e-11 seq7910 84.2 2e-11 >seq4586 Length=18721 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||| | | |||||||| || || |||||||||||||||||||| Sbjct 13881 CCACCCCTCAAACGAAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGCA 13940 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || || ||||| ||||| || |||| || ||| || || || || Sbjct 13941 AGGGTACGACCGTCCTCAAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 14000 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || ||||| ||| || |||||| | | | |||| | ||||||| Sbjct 14001 ATCCCTTCTTTGTCTTGAATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACC 14060 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || |||| ||| |||||||| || ||||| Sbjct 14061 TCGAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAATATCTGCAT 14107 >seq13106 Length=76417 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| |||||||||||| || ||| |||| || || || Sbjct 56330 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGC 56271 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| || | || || |||||||| || | || |||||||| || || Sbjct 56270 TTGCCGGCGAAGATGAGACGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTG 56211 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | ||| ||||| | ||| |||||||| ||||| Sbjct 56210 GCCTTGACGTTATCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTT 56151 Query 45314 AGAGTCTTCACAAAGATTTGCATGTT 45339 || || ||||| ||||| |||||||| Sbjct 56150 AGGGTTTTCACGAAGATCTGCATGTT 56125 >seq8473 Length=8692 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| |||||||||||| || ||| |||| || || || Sbjct 5378 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGC 5437 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| || | || || |||||||| || | || |||||||| || || Sbjct 5438 TTGCCGGCGAAGATGAGACGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTG 5497 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | ||| ||||| | ||| |||||||| ||||| Sbjct 5498 GCCTTGACGTTATCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTT 5557 Query 45314 AGAGTCTTCACAAAGATTTGCATGTT 45339 || || ||||| ||||| |||||||| Sbjct 5558 AGGGTTTTCACGAAGATCTGCATGTT 5583 >seq10926 Length=11099 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||||| ||||| ||||| || ||| | || || Sbjct 8502 ACCAAGTGCAGAGTCGATTCCTTCTGGATGTTATAGTCTGCCAAGGTGCGGCCATCCTCA 8561 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||||| ||| ||||| || || | ||||||||||||| | Sbjct 8562 AGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGA 8621 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | || ||||||| || || ||||| Sbjct 8622 ATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCGACCTCCA-AGTGAT-GTCTTC 8679 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| || ||||| ||||| Sbjct 8680 CCGGTCAAAGTCTTGACGAAGATCTGCAT 8708 >seq8384 Length=24589 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| ||| || | | | || |||||||| Sbjct 4245 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCAAGCGTCCTACCATCTTCCAGTTG 4186 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || || |||||||||| ||| ||||| || || | |||||||| ||| ||| || Sbjct 4185 TTTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCCTGAATCTT 4126 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | || |||||||||| || || || || || || Sbjct 4125 GGCCTTGACATTATCAATAGTATCAGACGATTCCACCTCCAAAGTGATGGTTTTCCCTGT 4066 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| Sbjct 4065 CAAGGTTTTAACAAAGATCTGCAT 4042 >seq7910 Length=9655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| ||| || | | | || |||||||| Sbjct 2481 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCAAGCGTCCTACCATCTTCCAGTTG 2422 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || || |||||||||| ||| ||||| || || | |||||||| ||| ||| || Sbjct 2421 TTTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCCTGAATCTT 2362 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | || |||||||||| || || || || || || Sbjct 2361 GGCCTTGACATTATCAATAGTATCAGACGATTCCACCTCCAAAGTGATGGTTTTCCCTGT 2302 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| Sbjct 2301 CAAGGTTTTAACAAAGATCTGCAT 2278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394978539296575