Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq945 143 3e-29 seq3314 96.9 3e-15 >seq945 Length=6199 Score = 143 bits (158), Expect = 3e-29 Identities = 242/347 (70%), Gaps = 9/347 (3%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 |||||||| ||||| ||||| | ||||| ||||| || | ||||||||||| ||| Sbjct 2220 AAACACGCGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTT 2161 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 14319 || || ||||| || || |||||||| |||||||| || || || || | || ||||| Sbjct 2160 AAACCCGGCATTAACCCACGTTTTTTCAACCAAAAAATCGC-GCAAAAACTCCCCGAAAA 2102 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 ||||| || || || ||||||||| || | |||||| | || | ||| | | Sbjct 2101 AAATATCCCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAG-----TTTCGGAT 2047 Query 14380 CGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437 | || |||||||| |||||| | | |||||| | || | || || ||||||||| Sbjct 2046 CCATCAATCCATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATA 1987 Query 14438 GCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 || |||||| | | || || |||| | | ||| || | || | | || ||| Sbjct 1986 GCCCGAAATAACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTA 1927 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14544 ||||||||||| || || || || || || || || || || ||||| Sbjct 1926 TACATTTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAA 1880 >seq3314 Length=31422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||||||||| || ||||| || || | |||| || | ||||||||| ||||||| Sbjct 22398 ACACGCAAAGTCGCAATGTAGTCCTTTGTCTCGTGAGATCAATTCGTTTGAGAATGTTAG 22457 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG-ATCCGGAAAAGA 14321 |||||||||||||| || ||||||||||||||||| || || || | ||| ||||| | Sbjct 22458 GCCTGGCATCAATCCGCGCTTTTTTAACCAAAATATCGC-GCAAAAGCTTCCTGAAAAAA 22516 Query 14322 ATATTCC 14328 |||| || Sbjct 22517 ATATCCC 22523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482224561401000