Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq13411 98.7 8e-16 seq5340 98.7 8e-16 seq8889 96.9 3e-15 seq8384 86.0 5e-12 seq7910 86.0 5e-12 seq16550 84.2 2e-11 seq4586 84.2 2e-11 seq6710 82.4 6e-11 >seq13411 Length=19963 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||||| || ||||||||||| || ||||||||||| | ||| | | | Sbjct 11474 TAAG-ACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCTAATGTCCTGCCGT 11416 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 |||| | ||||||||| ||| |||| | | |||||| || || | |||||| || | Sbjct 11415 CTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTGT 11356 Query 18232 CGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 | ||| | | || || || | | | ||||| || ||| ||| | ||| || Sbjct 11355 CTTGAATCT-TGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGACTTCTAAGGTTATT 11297 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || |||||||| || || |||||||| Sbjct 11296 GTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCATTTT 11259 >seq5340 Length=22833 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||||| || ||||||||||| || ||||||||||| | ||| | | | Sbjct 14277 TAAG-ACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCTAATGTCCTGCCGT 14335 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 |||| | ||||||||| ||| |||| | | |||||| || || | |||||| || | Sbjct 14336 CTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTGT 14395 Query 18232 CGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 | ||| | | || || || | | | ||||| || ||| ||| | ||| || Sbjct 14396 CTTGAATCT-TGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGACTTCTAAGGTTATT 14454 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || |||||||| || || |||||||| Sbjct 14455 GTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCATTTT 14492 >seq8889 Length=9065 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || || || ||||| ||||||||||| |||| ||| | | |||| Sbjct 1827 AGGACCAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCTGCCAACGTTCTGCCATCT 1768 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| |||| | ||| || || || ||| | ||||||||||| Sbjct 1767 TCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTATCT 1708 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||| ||||| | ||| ||||||| | ||| || | |||||| | Sbjct 1707 TGAATCT-TTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCGACCTCCAAAGTGATGGT 1649 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||| || |||||||| || || || || ||||| ||| Sbjct 1648 TTTCCCTGTCAATGTCTTGACGAAGATCTGCATGTTT 1612 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || || || || ||||||||||| || || | ||| | |||| Sbjct 2282 AGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGTCCATCT 2223 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || ||| |||| || || || || || || | || |||||||| Sbjct 2222 TCCAATTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCC 2163 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | |||||| | ||| ||| ||| | ||| || | |||||| || Sbjct 2162 TGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCCACCTCCAAAGTGATGGTT 2103 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || ||||| ||||| || ||||| |||||| Sbjct 2102 TTTCCTGTCAAAGTTTTAAC-AAAATCTGCATT 2071 >seq8384 Length=24589 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || || || || ||||||||||| ||||| | || ||| |||| Sbjct 4253 AGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCAAGCGTCCTACCATCT 4194 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||| || ||| | || | || || || ||| || | || |||||||| Sbjct 4193 TCCAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCC 4134 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | |||||| | ||| ||| ||| | || || | |||||| || Sbjct 4133 TGAATCTTGGCCTTGACATTATCAATAGTATCAGACGATTCCACCTCCAAAGTGATGGTT 4074 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||| ||||| ||||| || ||||| Sbjct 4073 TTCCCTGTCAAGGTTTTAACAAAGATCTGCAT 4042 >seq7910 Length=9655 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || || || || ||||||||||| ||||| | || ||| |||| Sbjct 2489 AGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCAAGCGTCCTACCATCT 2430 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||| || ||| | || | || || || ||| || | || |||||||| Sbjct 2429 TCCAGTTGTTTACCAGCAAATATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTATCC 2370 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | |||||| | ||| ||| ||| | || || | |||||| || Sbjct 2369 TGAATCTTGGCCTTGACATTATCAATAGTATCAGACGATTCCACCTCCAAAGTGATGGTT 2310 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||| ||||| ||||| || ||||| Sbjct 2309 TTCCCTGTCAAGGTTTTAACAAAGATCTGCAT 2278 >seq16550 Length=20979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| || || || || || |||||||||||||| || || Sbjct 17904 CCACCACGAAGACGAAGAACCAAATGCAGAGTCGACTCCTTTTGAATGTTGTAATCAGCA 17963 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | || || || ||| |||| || || ||||| || || Sbjct 17964 AGGGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGG 18023 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCGG 18276 | ||||||||||| ||| | | |||||| | ||| ||| | ||| || || Sbjct 18024 ATCCCTTCCTTATCTTGAATCTTTGCCTTGACATTATCAATAGTAT--CCGAGCTTTCAA 18081 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| |||| || ||||| |||||||||||||| ||||| Sbjct 18082 CCTCCAAAGTGATGGTTTTCCCTGTCAAAGTTTTTACAAAAATCTGCAT 18130 >seq4586 Length=18721 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| |||||| || ||||| || |||||||||||||| || | || || || Sbjct 13895 AAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGACCGTC 13954 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | ||||| || ||| |||| || || || ||||| ||| | ||||| || || Sbjct 13955 CTCAAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATCCCTTCTTTGTC 14014 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | ||| || | ||| |||||| | ||| || | |||||| | Sbjct 14015 TTGAATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACCTCGAGAGTGATGGT 14074 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 || || ||||| ||||| ||||| || ||||| | ||||| Sbjct 14075 CTTTCCAGTCAAAGTTTTCACAAATATCTGCATCTGTAAAC 14115 >seq6710 Length=13574 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || ||||| |||| ||||| ||||| || || || ||||||||||| || Sbjct 2921 TCCTCCCCTAAGCCTAAGAACCAGATGAAGCGTTGACTCCTTCTGGATGTTGTAGTCTGC 2862 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || ||| ||||| ||||| || ||| | || | ||| || || ||| || Sbjct 2861 AAGAGTTCGACCATCCTCCAACTGTTTCCCAGCAAAAATCAATCTCTGCTGGTCCGGAGG 2802 Query 18218 CACGCCTTCCTTATC 18232 | |||||| || || Sbjct 2801 AATGCCTTCTTTGTC 2787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379251188155875