Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq13411 141 8e-29 seq5340 141 8e-29 seq8384 104 2e-17 seq7910 104 2e-17 >seq13411 Length=19963 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||||||||||||||||| |||||| | || |||||||| | Sbjct 11262 ATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCCTCC 11321 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || | || ||| | ||||||||| | || ||||| Sbjct 11322 GACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGACCAA 11381 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||||||||| | ||| ||||||||||| ||||| || ||| | ||| |||| Sbjct 11382 CAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTACAAT 11441 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || ||||| |||| |||||||| || ||||| || || || ||| Sbjct 11442 ATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGGT 11489 >seq5340 Length=22833 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||||||||||||||||| |||||| | || |||||||| | Sbjct 14489 ATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCCTCC 14430 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || | || ||| | ||||||||| | || ||||| Sbjct 14429 GACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGACCAA 14370 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||||||||| | ||| ||||||||||| ||||| || ||| | ||| |||| Sbjct 14369 CAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGACATTAGCCGACTACAAT 14310 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || ||||| |||| |||||||| || ||||| || || || ||| Sbjct 14309 ATCCAAAAAGAATCCACTCTTCATTTGGTCTTACGTTTACGTGGCGGT 14262 >seq8384 Length=24589 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||||||||| || || ||||| || || | || || |||||| Sbjct 4042 ATGCAGATCTTTGTTAAAACCTTGACAGGGAAAACCATCACTTTGGAGGTGGAATCGTCT 4101 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCG-TACCGGTTGACCA 24950 || | | | || | ||| |||| || ||| | | | ||| ||| | | || ||||| Sbjct 4102 GATACTATTGATAATGTCAAGGCCAAGATT-CAGGATAAGGAGGGGATCCCACCGGACCA 4160 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || |||| ||| || ||||||||||||||| | ||| | |||||||| Sbjct 4161 GCAGAGGTTGATATTTGCTGGTAAACAACTGGAAGATGGTAGGACGCTTGCCGATTACAA 4220 Query 25011 CATACAGAAAGAGGCCACGCTTCA 25034 ||| ||||| ||| |||| ||||| Sbjct 4221 CATTCAGAAGGAGTCCACCCTTCA 4244 >seq7910 Length=9655 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||||||||| || || ||||| || || | || || |||||| Sbjct 2278 ATGCAGATCTTTGTTAAAACCTTGACAGGGAAAACCATCACTTTGGAGGTGGAATCGTCT 2337 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCG-TACCGGTTGACCA 24950 || | | | || | ||| |||| || ||| | | | ||| ||| | | || ||||| Sbjct 2338 GATACTATTGATAATGTCAAGGCCAAGATT-CAGGATAAGGAGGGGATCCCACCGGACCA 2396 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || |||| ||| || ||||||||||||||| | ||| | |||||||| Sbjct 2397 GCAGAGGTTGATATTTGCTGGTAAACAACTGGAAGATGGTAGGACGCTTGCCGATTACAA 2456 Query 25011 CATACAGAAAGAGGCCACGCTTCA 25034 ||| ||||| ||| |||| ||||| Sbjct 2457 CATTCAGAAGGAGTCCACCCTTCA 2480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418201656044000