Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq945 172 5e-38 seq8384 114 1e-20 seq7910 114 1e-20 seq4675 114 1e-20 seq13411 113 4e-20 seq5340 113 4e-20 seq13106 107 2e-18 seq8473 107 2e-18 seq1845 104 2e-17 seq10926 89.7 5e-13 seq16550 87.8 2e-12 seq5280 84.2 2e-11 seq6710 82.4 7e-11 >seq945 Length=6199 Score = 172 bits (190), Expect = 5e-38 Identities = 417/623 (67%), Gaps = 15/623 (2%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATT-TGTCATGTTTCCGATTGAATATCC 57565 || |||||||||||| | || || | |||| ||| ||||| || ||| |||| || Sbjct 1604 GAAGAACCACTTTTGGCACCAAACCCAGATCGATTCTGT-ATGTTCCCAATTCAATACCC 1662 Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 | | || ||| | ||||| ||||| || ||||| || |||||||||| ||||||||| || Sbjct 1663 ACAAATCTGGGAAATGTATAAAAAAGCCGAAGCCTCATTTTGGACCGCCGAAGAAGTCGA 1722 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 | || | |||| | | ||||| || | | || || | | || |||| Sbjct 1723 TTTATCCGAAGATCAACGTCACTGGGACGCCTTAACCGACGGCGAACGCCACTTCATTAC 1782 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAA----TTTGGTCG 57741 ||||| | || ||||||||||| || || || || ||| ||| || |||||| Sbjct 1783 TCACGTCCTCGCTTTTTTCGCCGCGTCAGACGGCATCGTTCTCGAAAACCTCGCTGGTCG 1842 Query 57742 AAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGC-TTTTACGGATTTCAAGTG 57800 | || | | ||||||| ||||| | |||||| | ||| ||||||||||| ||| | Sbjct 1843 ---GTTTATGA-AAGAAGTCCAAGTCGCCGAGGCGCG-TGCGTTTTACGGATTCCAAATC 1897 Query 57801 GCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC 57860 || ||||| || | ||||| ||||||||| | | | || | || | || || Sbjct 1898 GCGATTGAGAATATTCATTCTGAAATGTATAGTTTGTTGTTGGAATCTTATATTAAAGAT 1957 Query 57861 AACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAG 57920 | || ||| | | || || || ||||| || || | | || || Sbjct 1958 TCTAATGAAAAAAACCGGTTATTTCGGGCTATTGAAACGATTCCTTGTGTTGAGAAAAAA 2017 Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 || | ||| | | |||||||| | | || | || ||||| || || | ||| Sbjct 2018 GCCAACTGGGCTTTGAAATGGATTGATGGATCC---GAAACTTTCGCAGAACGGATTATC 2074 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 ||||| || ||||||||| ||||| |||||||| || ||| || || |||||| || Sbjct 2075 GCGTTTGCTTGCGTCGAAGGGATATTTTTTTCGGGGAGTTTTTGCGCGATTTTTTGGTTG 2134 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 || ||||| || | ||||| || | |||||| ||||||||||||||| | |||||| Sbjct 2135 AAAAAACGTGGGTTAATGCCGGGTTTAACGTTTTCAAACGAGTTGATATCGAGAGACGAG 2194 Query 58101 GGTCTCCATACTGATTTTGCGTG 58123 ||| | ||| ||||| ||||| Sbjct 2195 GGTTTGCATTGCGATTTCGCGTG 2217 >seq8384 Length=24589 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || |||||||| || || ||||| ||||| |||| || || Sbjct 3354 AAATATGCAGATCTTTGTTAAGACTCTTACTGGTAAAACCATCACTCTCGAAGTCGAGAG 3413 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | |||| | || || || ||| ||||| ||||| | || || || Sbjct 3414 CTCTGACACTATCGATAATGTTAAGGCGAAAATCCAAGACAAAGAAGGGATCCCCCCAGA 3473 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | | || || ||||| || ||| | || ||| | || || |||||| Sbjct 3474 CCAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACCTTGGCCGATTA 3533 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| ||||| || || ||||| || || || |||||||||||| Sbjct 3534 CAACATTCAAAAGGAATCAACCCTCCATCTTGTTCTCAGGTTGAGGGGCGGTA 3586 >seq7910 Length=9655 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || |||||||| || || ||||| ||||| |||| || || Sbjct 1590 AAATATGCAGATCTTTGTTAAGACTCTTACTGGTAAAACCATCACTCTCGAAGTCGAGAG 1649 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | |||| | || || || ||| ||||| ||||| | || || || Sbjct 1650 CTCTGACACTATCGATAATGTTAAGGCGAAAATCCAAGACAAAGAAGGGATCCCCCCAGA 1709 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | | || || ||||| || ||| | || ||| | || || |||||| Sbjct 1710 CCAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACCTTGGCCGATTA 1769 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| ||||| || || ||||| || || || |||||||||||| Sbjct 1770 CAACATTCAAAAGGAATCAACCCTCCATCTTGTTCTCAGGTTGAGGGGCGGTA 1822 >seq4675 Length=16269 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || |||||||| || || ||||| ||||| |||| || || Sbjct 15741 AAATATGCAGATCTTTGTTAAGACTCTTACTGGTAAAACCATCACTCTCGAAGTCGAGAG 15800 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | |||| | || || || ||| ||||| ||||| | || || || Sbjct 15801 CTCTGACACTATCGATAATGTTAAGGCGAAAATCCAAGACAAAGAAGGGATCCCCCCAGA 15860 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | | || || ||||| || ||| | || ||| | || || |||||| Sbjct 15861 CCAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGTCGTACCTTGGCCGATTA 15920 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| ||||| || || ||||| || || || |||||||||||| Sbjct 15921 CAACATTCAAAAGGAATCAACCCTCCATCTTGTTCTCAGGTTGAGGGGCGGTA 15973 >seq13411 Length=19963 Score = 113 bits (124), Expect = 4e-20 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || |||||||| || | || |||||||| || ||| | || || ||| | Sbjct 11259 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 11318 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || ||| | || ||||| |||||| | || || ||| Sbjct 11319 TCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGAC 11378 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTA 31368 || || ||| |||| || || |||||||| | |||||| | ||| || ||| || || Sbjct 11379 CAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGAC-ATTAGCCGACTA 11437 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTA 31406 || || ||||||||||| ||||||||| |||| |||| Sbjct 11438 CAATATCCAAAAAGAATCCACTCTTCATTTGGT-CTTA 11474 >seq5340 Length=22833 Score = 113 bits (124), Expect = 4e-20 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || |||||||| || | || |||||||| || ||| | || || ||| | Sbjct 14492 AAAATGCAGATCTTCGTAAAAACCTTAACCGGCAAAACAATAACCTTAGAAGTCGAATCC 14433 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || ||| | || ||||| |||||| | || || ||| Sbjct 14432 TCCGACACAATCGACAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATCCCACCAGAC 14373 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTA 31368 || || ||| |||| || || |||||||| | |||||| | ||| || ||| || || Sbjct 14372 CAACAACGTTTAATCTTTGCAGGCAAACAACTTGAAGACGGCAGGAC-ATTAGCCGACTA 14314 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTA 31406 || || ||||||||||| ||||||||| |||| |||| Sbjct 14313 CAATATCCAAAAAGAATCCACTCTTCATTTGGT-CTTA 14277 >seq13106 Length=76417 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || ||||| || || || || || || ||||| ||| | || ||||| Sbjct 56123 CAAACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGT 56182 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || |||||||||||| | || |||| Sbjct 56183 CTTCCGACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCG 56242 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || ||||| ||||| ||| | |||||| || | ||| | Sbjct 56243 ACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCGCCGACT 56302 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || || ||||| ||||| || || Sbjct 56303 ACAACATCCAGAAGGAGTCCACTCTCCATCTCGTCCT 56339 >seq8473 Length=8692 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || ||||| || || || || || || ||||| ||| | || ||||| Sbjct 5585 CAAACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGT 5526 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || |||||||||||| | || |||| Sbjct 5525 CTTCCGACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCG 5466 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || ||||| ||||| ||| | |||||| || | ||| | Sbjct 5465 ACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCGCCGACT 5406 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || || ||||| ||||| || || Sbjct 5405 ACAACATCCAGAAGGAGTCCACTCTCCATCTCGTCCT 5369 >seq1845 Length=6980 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 ||| | | ||||| || || || ||||| || || ||||| || ||||| | || |||| Sbjct 4209 AATTACAGATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACCATCACTCTAGAGGTTG 4150 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | ||||||| |||| | ||||| || ||| ||||||||||| | || | Sbjct 4149 AGAGCTCCGACACAATCGATAATGTCAAGGCGAAAATCCAAGACAAGGAAGGGATCCCCC 4090 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | |||||||| | || || || |||||||| ||| | || || | ||| | | Sbjct 4089 CAGACCAGCAAAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACCCTTGCGG 4030 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| ||||| ||||| ||||| ||||| ||||| || | || ||||||| |||| Sbjct 4029 ATTACAACATCCAAAAGGAATCAACTCTCCATCTTGTGTTGAGGTTGAGGGGAGGTA 3973 >seq10926 Length=11099 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || |||||||| || | |||| ||||| |||| || || Sbjct 8938 AAATATGCAGATCTTTGTGAAGACTCTTACGGT--AAACTATCACTCTCGAGGTCGAGAG 8881 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | |||| | ||||| || ||| |||||||||||| | || || || Sbjct 8880 CTCAGATACCATCGATAATGTCAAGGCGAAAATCCAGGACAAGGAAGGGATCCCACCAGA 8821 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||| ||| | | || || |||||||| ||| | || ||| || || ||||| Sbjct 8820 CCAACAGAGGTTGATCTTTGCTGGCAAGCAGCTCGAGGACGGGCGTACCTTGGCAGATTA 8761 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| ||||| || || ||||| || || || ||||||| |||| Sbjct 8760 CAACATCCAAAAGGAATCAACCCTCCATCTTGTGCTGAGGTTGAGGGGAGGTA 8708 >seq16550 Length=20979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| ||||| ||| ||||||| ||||| ||||| | || |||||| || Sbjct 18130 ATGCAGATTTTTGTAAAAACTTTGACAGGGAAAACCATCACTTTGGAGGTTGAAAGCTCG 18071 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | ||||| || ||| | | | |||||||| | || || ||||| Sbjct 18070 GATACTATTGATAATGTCAAGGCAAAGATTCAAG-ATAAGGAAGGGATCCCACCAGACCA 18012 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || ||||| || ||| | || || || | ||||| || Sbjct 18011 ACAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGGCGTACCCTTGCTGATTACAA 17952 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| || |||||||| ||| |||| ||| | || | || |||| Sbjct 17951 CATTCAAAAGGAGTCGACTCTGCATTTGGTTCTTCGTCTTCGTGGTGGTA 17902 >seq5280 Length=29361 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| ||||||| ||||| ||||| | || || || || Sbjct 6544 ATGCAGATCTTTGTCAAGACTTTGACAGGGAAAACCATCACTTTGGAGGTCGAGAGCTCT 6603 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||||||| | || || |||||| Sbjct 6604 GACACAATCGATAATGTTAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 6663 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || |||||||| ||| | || ||| || | ||||| ||| Sbjct 6664 CAGAGGTTGATTTTTGCTGGCAAGCAGCTTGAGGACGGACGTACCCTTGCTGATTACAAC 6723 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || || |||||||| ||| | || | || |||| Sbjct 6724 ATCCAGAAAGAGTCTACCCTCCATCTGGTTCTTCGTCTCCGTGGTGGTA 6772 >seq6710 Length=13574 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||| |||||| | || || ||||||||| | | || || ||||| ||||||||||| Sbjct 2786 GGACAAAGAAGGCATTCCTCCGGACCAGCAGAGATTGATTTTTGCTGGGAAACAGTTGGA 2845 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || | ||| | || || ||||| || || || || || ||||||||||| || Sbjct 2846 GGATGGTCGAACTCTTGCAGACTACAACATCCAGAAGGAGTCAACGCTTCATCTGGTTCT 2905 Query 31405 TAGACTGAGGGGCGG 31419 ||| || ||||| || Sbjct 2906 TAGGCTTAGGGGAGG 2920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445654540494000