Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13]
20,075 sequences; 326,165,195 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq945 271 1e-67
seq3314 178 2e-39
seq14165 113 6e-20
seq4091 113 6e-20
>seq945
Length=6199
Score = 271 bits (300), Expect = 1e-67
Identities = 604/898 (67%), Gaps = 14/898 (2%)
Strand=Plus/Minus
Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349
||| || || || || || | ||| || ||||||||||| || || | ||| || ||
Sbjct 2509 TTTCTGATACTCCCCAACCCTTTTCTCAAAAAAATTAGTCTTCCCCTGCAACGAGATCAA 2450
Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409
||||| ||||||||||||| ||||| || |||||| | | ||||| | |
Sbjct 2449 CTCCATCCAATCAAACGGATTCTGCACATTATACATTTTTGAATAACCCAACGCCCCCAA 2390
Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469
||| ||||| ||||| | || ||||| |||||| || | |||||| || | |
Sbjct 2389 CAACCTATCCGCGACATACTCAATATAAACACTCATCAAATCCCCATTCATCCCAACCAA 2330
Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529
| || | ||| | || || || ||| ||| ||| || | || |||||
Sbjct 2329 AGCACACGGCAACGCCTCGCAAACGAACTCCCTTTCGATGTTTACAGCGTCTGCGATAAT 2270
Query 33530 AAATCTAACGGTTTCTTCACTCGG-TGGATGT--AATAAA-TGTTTAAACATCAAACATG 33585
| | ||| ||| |||||| | || | || ||| ||| ||| |||||| |
Sbjct 2269 CCCTTTTACGCGTTCCTCACTCAACTTCATTTTCAACAAACTGTATAA----CAAACACG 2214
Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645
|||||||||| |||| |||||||||||| || || ||||| |||||||| | || |
Sbjct 2213 CGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTTAAACCCG 2154
Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG-GAAAAGAAGATT 33704
|||||| ||||| ||||| | |||||| || | || || ||| ||||| || ||
Sbjct 2153 GCATTAACCCACGTTTTTTCAACCAAAAAATCGC-GCAAAAACTCCCCGAAAAAAATATC 2095
Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCAC 33764
||||| || |||||| || |||| | ||| | || || ||| |||||
Sbjct 2094 CCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAGTTTCGGATCCATCAATCCAT 2035
Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824
|| |||||| | ||| || || | |||||||| |||||||| || || ||| |
Sbjct 2034 TTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATAGCCCGAAATAAC 1975
Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884
||||||||||||| |||||||| ||||| || | ||| | |||||||||||| |||
Sbjct 1974 CGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTATACATTTCAGAA 1915
Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944
||||| || ||||| || || || |||||||| || | ||||||| | || |||
Sbjct 1914 TGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCTCGGCGACTTGGACT 1855
Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004
||| | ||| || | || | ||||| || || || || || || |||||
Sbjct 1854 TCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGACGCGGCGAAAAAA 1795
Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT--CATTGA 34062
|| | || || | || || | |||| | |||| | ||| | | |||
Sbjct 1794 GCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAGGCGTCCCAGTGACGTTG- 1736
Query 34063 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 34122
||||| |||| ||| |||||||| | ||||||||||| || || || ||||||||||
Sbjct 1735 -ATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGGCTTTTTTATACA 1677
Query 34123 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 34180
| | |||||| | | ||||| |||||||| ||| |||| || ||| ||||||||
Sbjct 1676 TTTCCCAGATTTGTGGGTATTGAATTGGGAACATACAGAATCGATCTGGGTTTGGTGC 1619
>seq3314
Length=31422
Score = 178 bits (196), Expect = 2e-39
Identities = 297/426 (70%), Gaps = 10/426 (2%)
Strand=Plus/Plus
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
|||||||| | ||||||| ||||||||||| ||||| || || ||||| || ||| |
Sbjct 22876 ATCCACTTAAGCGCCCAATTGGCCTTCTTTTGAACACACGGAATAGTTTCAATAGCACGA 22935
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG---ACTATAC 33875
|| || | | |||||| || ||| |||| ||||| || |||||| |||||||
Sbjct 22936 AACAGCCTGCTCTTTTCACTAGAATCCTTAATATAAGATTC---CAAAAGCAAACTATAC 22992
Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935
||||||||||| || || |||||||| |||||||| ||||| ||| | |||||||
Sbjct 22993 ATTTCCGAATGGATATTCTCAATGGCAATCTGAAACCCGTAAAAAGCACGTGCCTCGGCG 23052
Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995
||||| | ||| | ||| | | || |||||||| || |||||||| ||
Sbjct 23053 ATCTGTATCTCTTTCATAAACCTTGAAGCCAAATTTTCCAAAACAATTCCATCTGATGCG 23112
Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 34055
|| ||||| || | || || | | || | |||| | ||||| | ||
Sbjct 23113 GCGAAAAATGCGAGAACGTGAGTCACGAAGTGACGTTCGCCGTCTGTTAACGACTCGTAA 23172
Query 34056 T--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| | ||| |||| |||| ||| |||||||| ||||||||||||| || || || |
Sbjct 23173 TGACGTTG--GTCTTGCGATAAATCGACTTCTTCTGCTGTCCAAAATGAGGCTTCGGCTT 23230
Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173
|||| ||||| | ||| || | | ||||||||||| || || ||||| | |||||
Sbjct 23231 TTTTGTACATTTCCCAAATTTGTGGGTATTGGATTGGAAACATGCAGAATCTGTCTGGAT 23290
Query 34174 TTGGTG 34179
||||||
Sbjct 23291 TTGGTG 23296
>seq14165
Length=56756
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482
||||| ||||| | |||| || || | |||| | || | || |||||| | ||| ||
Sbjct 34421 CCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCCA 34480
Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542
|| ||| | ||||| || || || |||| |||| | ||||| |||||| ||| ||
Sbjct 34481 TTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGAA 34540
Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602
| ||| ||||| ||||| ||| || | || ||| |||||||||||||| |||
Sbjct 34541 ACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAACGTGTCATATATG 34600
Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644
||||| |||||||| || ||||| | || |||||||||
Sbjct 34601 CCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 34642
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722
||||| ||||| || | ||| ||||| || || || |||||| | | || | | | |
Sbjct 34799 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 34858
Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782
|| |||| | | | || || ||||| | |||||| || || || || | |||||||
Sbjct 34859 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 34918
Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842
||||| ||||||||||| |||| || || || ||||| | || ||| | || |
Sbjct 34919 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 34978
Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
||||| |||||||| | | || |||||| || || || |||||
Sbjct 34979 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 35025
>seq4091
Length=20028
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482
||||| ||||| | |||| || || | |||| | || | || |||||| | ||| ||
Sbjct 16137 CCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCCA 16196
Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542
|| ||| | ||||| || || || |||| |||| | ||||| |||||| ||| ||
Sbjct 16197 TTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGAA 16256
Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602
| ||| ||||| ||||| ||| || | || ||| |||||||||||||| |||
Sbjct 16257 ACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAACGTGTCATATATG 16316
Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644
||||| |||||||| || ||||| | || |||||||||
Sbjct 16317 CCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 16358
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722
||||| ||||| || | ||| ||||| || || || |||||| | | || | | | |
Sbjct 16516 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 16575
Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782
|| |||| | | | || || ||||| | |||||| || || || || | |||||||
Sbjct 16576 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 16635
Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842
||||| ||||||||||| |||| || || || ||||| | || ||| | || |
Sbjct 16636 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 16695
Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
||||| |||||||| | | || |||||| || || || |||||
Sbjct 16696 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 16742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629659555146000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |