Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3314 93.3 4e-14 seq14165 82.4 7e-11 seq4091 82.4 7e-11 >seq3314 Length=31422 Score = 93.3 bits (102), Expect = 4e-14 Identities = 286/429 (67%), Gaps = 24/429 (6%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 ||| ||||| || | |||| || | ||||||||||||||||| ||| || || || Sbjct 22107 CTTCTGATACTCCCCGACTC-TCTTCTCGAAAAAATTAGTCTTCCCTCGTAACGAAATCA 22165 Query 11397 ACTCCATAAAGCTAAAAGGATTATA--TACATTGAAGACTTTTTCACAACCTAACTCTGT 11454 | ||||| | ||| ||||| | ||| | | | ||| |||| || || ||| Sbjct 22166 ATTCCATCCAATCAAACGGATTCTGAGTACCAT--ACATTTTGCCACATCCCAATTCTCC 22223 Query 11455 TAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTAT 11514 || |||||||| || || || || || || ||| ||| | || || ||||| || | Sbjct 22224 CAACAATCTATCCGCTACAAACTCAATGTATTGACTCATAAGACCACCGTTCATTCCAAC 22283 Query 11515 AAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGAT 11574 ||| | || | || | | |||||| | || || | ||| |||||| || Sbjct 22284 AAGCGCGCAAGGTAACGCGTCGCAAACAAACTCTCTCTCGATCTCAACTGCATCA--GA- 22340 Query 11575 TATCGACG--TTATAA-----CTTCC-TTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 | ||| | || || ||||| |||| | || | | || ||| ||| | | Sbjct 22341 -AACGATGCCTTTTACGCCTTCTTCCGTTAGTTTGTTGTT-TAGTAA---TTTGTATAGC 22395 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | ||||||||| || ||||||| |||| ||||| || | ||| || || |||||| Sbjct 22396 AGACACGCAAAGTCGCAATGTAGTCCTTTGTCTCGTGAGATCAATTCGTTTGAGAATGTT 22455 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATG-AACCAGAAAA 11745 | || ||||||||||| || ||||||| ||||||||| || ||||| | || ||||| Sbjct 22456 AGGCCTGGCATCAATCCGCGCTTTTTTAACCAAAATATCGC-GCAAAAGCTTCCTGAAAA 22514 Query 11746 GAATATTCC 11754 ||||| || Sbjct 22515 AAATATCCC 22523 >seq14165 Length=56756 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/167 (71%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 38386 AAACAA-CTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATG 38444 |||||| || | | ||||||| ||| |||||||| || || | || ||||||||||| Sbjct 34771 AAACAATCTTCATACTTGAGGCCTTGGTGTTCCGGCATTGAAAAGGGTGGGAGATGCATG 34830 Query 38445 TATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCC 38504 |||||||| | | |||| | | ||||| | | ||| ||| |||||| | Sbjct 34831 GGTGAACCATCTCTGTGACATCAAGTGGTATGTCTTGAGAACAGAATCAATATCATCCTT 34890 Query 38505 GTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||||| || | || || ||||||| ||| ||||| |||||||||| Sbjct 34891 ATGAATCCCAACAGCAACTCTCATTAACATGTGTTGAGGTCTTTCTA 34937 >seq4091 Length=20028 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/167 (71%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 38386 AAACAA-CTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATG 38444 |||||| || | | ||||||| ||| |||||||| || || | || ||||||||||| Sbjct 16488 AAACAATCTTCATACTTGAGGCCTTGGTGTTCCGGCATTGAAAAGGGTGGGAGATGCATG 16547 Query 38445 TATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCC 38504 |||||||| | | |||| | | ||||| | | ||| ||| |||||| | Sbjct 16548 GGTGAACCATCTCTGTGACATCAAGTGGTATGTCTTGAGAACAGAATCAATATCATCCTT 16607 Query 38505 GTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||||| || | || || ||||||| ||| ||||| |||||||||| Sbjct 16608 ATGAATCCCAACAGCAACTCTCATTAACATGTGTTGAGGTCTTTCTA 16654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468407229558000