Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13411 129 6e-25 seq5340 129 6e-25 seq945 104 2e-17 seq13106 100 3e-16 seq8473 100 3e-16 seq4586 95.1 1e-14 seq16006 84.2 2e-11 seq1845 84.2 2e-11 seq16550 82.4 8e-11 >seq13411 Length=19963 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| |||||||| || || || |||| || || |||||||| || || || ||| Sbjct 11488 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 11429 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| || ||||| || ||| |||| | |||||| || || || || Sbjct 11428 AATGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGG 11369 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| | || | ||| | | || | |||||||| || || || Sbjct 11368 ATGCCTTCTTTGTCT-TGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGAC 11310 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || |||||||| || ||||||||||| || ||||| Sbjct 11309 TTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 11262 >seq5340 Length=22833 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| |||||||| || || || |||| || || |||||||| || || || ||| Sbjct 14263 CCGCCACGTAAACGTAAGACCAAATGAAGAGTGGATTCTTTTTGGATATTGTAGTCGGCT 14322 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| || ||||| || ||| |||| | |||||| || || || || Sbjct 14323 AATGTCCTGCCGTCTTCAAGTTGTTTGCCTGCAAAGATTAAACGTTGTTGGTCTGGTGGG 14382 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| | || | ||| | | || | |||||||| || || || Sbjct 14383 ATGCCTTCTTTGTC-TTGAATCTTGGCTTTCACATTGTCGATTGTGTCGGAGGATTCGAC 14441 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || |||||||| || ||||||||||| || ||||| Sbjct 14442 TTCTAAGGTTATTGTTTTGCCGGTTAAGGTTTTTACGAAGATCTGCAT 14489 >seq945 Length=6199 Score = 104 bits (114), Expect = 2e-17 Identities = 170/242 (70%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 52537 GCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAA 52596 ||| |||| | |||| ||||| ||||| | | ||||| ||||||||||| || Sbjct 1985 GCTATTGAAACGATTCCTTGTGTTGAGAAAAAAGCCAACTGGGCTTTGAAATGGATTGAT 2044 Query 52597 AACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGttt 52656 | || ||||| || ||||| | ||||||||||| || ||||| | ||| Sbjct 2045 GGATCCGAA---ACTTTCGCAGAACGGATTATCGCGTTTGCTTGCGTCGAAGGGATATTT 2101 Query 52657 ttttCGGGTAGTTTTGCGGCAATATTTTACAT-CAAAACCTTGGGCATAATGCCCGGCCT 52715 |||||||| |||||| || || |||| | |||| | |||| ||||||| || | Sbjct 2102 TTTTCGGGGAGTTTTTGCGCGATTTTTTGGTTGAAAAAACGTGGG-TTAATGCCGGGTTT 2160 Query 52716 CACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTT 52775 |||||| ||||||||||||||| | ||||| || |||| ||||| |||||||| Sbjct 2161 AACGTTTTCAAACGAGTTGATATCGAGAGACGAGGGTTTGCATTGCGATTTCGCGTGTTT 2220 Query 52776 GT 52777 || Sbjct 2221 GT 2222 >seq13106 Length=76417 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | || | || ||||| || || ||||| || ||| Sbjct 56355 GCCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 56296 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||||||||| || || || |||| ||||||||||| ||||| || Sbjct 56295 GAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGTGG 56236 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||||| | ||| || Sbjct 56235 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCGGAAGACTCAAC 56176 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||| || || | ||||| ||||| || ||||| Sbjct 56175 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 56128 >seq8473 Length=8692 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | || | || ||||| || || ||||| || ||| Sbjct 5353 GCCGCCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 5412 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||||||||| || || || |||| ||||||||||| ||||| || Sbjct 5413 GAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGTGG 5472 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||||| | ||| || Sbjct 5473 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCGGAAGACTCAAC 5532 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||| || || | ||||| ||||| || ||||| Sbjct 5533 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 5580 >seq4586 Length=18721 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | || ||||||| || || || || |||||||| || || | || | Sbjct 13890 AAACGAAGCACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGA 13949 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || |||||||| || ||| ||||||| | |||||||| || || || |||||| Sbjct 13950 CCGTCCTCAAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATCCCTTCT 14009 Query 139667 TTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | || | ||| | | || | ||||| | | ||||||||| | || Sbjct 14010 TTGTC-TTGAATCTTGGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCACCTCGAGAGT 14068 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| ||||| || ||||| ||||| Sbjct 14069 GATGGTCTTTCCAGTCAAAGTTTTCACAAATATCTGCAT 14107 >seq16006 Length=16259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||| ||||| || ||| || || || || ||||| || || ||| Sbjct 13231 GTGGACTCTTTTTGGATGTTGTAGTCGGCCAGGGTCCTGCCATCCTCGAGTTGCTTGCCA 13172 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | |||| | |||||| || || || || |||||||| || ||| ||| || Sbjct 13171 GCAAAAATCAACCTTTGCTGGTCTGGCGGGATCCCTTCTTTATCTTGGATCTTTGCCTTG 13112 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | || ||||| | || | ||||| || ||||| || Sbjct 13111 ACGTTGTCAATGGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTCTTCCCTGTCAAAGTC 13052 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| ||||||||| || Sbjct 13051 TTGACGAAGATTTGCATACCT 13031 >seq1845 Length=6980 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | |||||||| ||||| ||||| || || | Sbjct 3747 CCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCC 3806 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || ||||| |||||||| | |||| | |||||||| || || Sbjct 3807 AAGGTCCTGCCATCCTCAAGCTGCTTACCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 3866 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | || ||| Sbjct 3867 ATCCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCGACC 3926 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | ||||| ||||||||||| || ||||| || |||||| || Sbjct 3927 TCCAAAGTGATGGTCTTTCCGGTCAACGTCTTGACGAAGATCTGCATACCT 3977 >seq16550 Length=20979 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || |||||||||||||| || || || ||||| ||||||||||| Sbjct 17706 GTAGACTCCTTCTGAATGTTATAATCTGCCAACGTCCTGCCATCTTCAAGCTGTTTACCT 17765 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | |||||||| || || || || || || || |||||| || Sbjct 17766 GCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCCTCCTTATCTTGGATTTTGGCCTTG 17825 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | | ||| || || | || | ||||| || ||||| ||| Sbjct 17826 ACATTATCGATGGTATCTGAGCTCTCGACTTCCAAAGTGATTGTCTTTCCAGTCAAGGTT 17885 Query 139748 TTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 17886 TTCACAAAGATCTGCATA 17903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495939518940000