Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq945 302 6e-77 seq3314 183 4e-41 seq14165 122 1e-22 seq4091 122 1e-22 >seq945 Length=6199 Score = 302 bits (334), Expect = 6e-77 Identities = 611/898 (68%), Gaps = 14/898 (2%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || || || || | ||| || ||||||||||| || || | ||| || || Sbjct 2509 TTTCTGATACTCCCCAACCCTTTTCTCAAAAAAATTAGTCTTCCCCTGCAACGAGATCAA 2450 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| ||||||||||||| |||||||| |||||| | | ||||| | | Sbjct 2449 CTCCATCCAATCAAACGGATTCTGCACATTATACATTTTTGAATAACCCAACGCCCCCAA 2390 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 ||| |||||||||||| | || ||||| |||||| || | |||||| || | | Sbjct 2389 CAACCTATCCGCGACATACTCAATATAAACACTCATCAAATCCCCATTCATCCCAACCAA 2330 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | || | ||| | || || || ||| ||| ||| || |||| ||||| Sbjct 2329 AGCACACGGCAACGCCTCGCAAACGAACTCCCTTTCGATGTTTACAGCGTCTGCGATAAT 2270 Query 49908 AGATCTAACGGTTTCTTCACTCGG-TGGATG--CAATAAA-TGTTTAAACATCAAACATG 49963 | | ||| ||| |||||| | || ||| ||| ||| ||| |||||| | Sbjct 2269 CCCTTTTACGCGTTCCTCACTCAACTTCATTTTCAACAAACTGTATAA----CAAACACG 2214 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 |||||||||| |||| |||||||||||| || | ||||| |||||||| | || | Sbjct 2213 CGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTTAAACCCG 2154 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA-CCCAGAAAAGAAGATT 50082 |||||| ||||| ||||| | |||||| || | |||||| ||| ||||| || || Sbjct 2153 GCATTAACCCACGTTTTTTCAACCAAAAAATCG-CGCAAAAACTCCCCGAAAAAAATATC 2095 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCAC 50142 ||||| || ||||| || | || | ||| | || | || ||| ||||| Sbjct 2094 CCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAGTTTCGGATCCATCAATCCAT 2035 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 || |||||| | ||| || || | |||||||| |||||||| || || ||| | Sbjct 2034 TTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATAGCCCGAAATAAC 1975 Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262 ||||||||||||| |||||||| ||||| || | ||| | |||||||||||| ||| Sbjct 1974 CGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTATACATTTCAGAA 1915 Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 50322 ||||| || ||||| || || || |||||||| || | ||||||| | || ||| Sbjct 1914 TGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCTCGGCGACTTGGACT 1855 Query 50323 TCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382 ||| | ||| || |||| | ||||| || || ||||| || || ||||| Sbjct 1854 TCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGACGCGGCGAAAAAA 1795 Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT--CATTGA 50440 || | || || | || || || |||| | |||| | ||| | | ||| Sbjct 1794 GCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAGGCGTCCCAGTGACGTTG- 1736 Query 50441 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 50500 ||||| |||| ||| |||||||| | ||||||||||| || || || |||||||||| Sbjct 1735 -ATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGGCTTTTTTATACA 1677 Query 50501 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 50558 | | |||||| | | ||||| |||||||| ||| |||| || ||| |||||||| Sbjct 1676 TTTCCCAGATTTGTGGGTATTGAATTGGGAACATACAGAATCGATCTGGGTTTGGTGC 1619 >seq3314 Length=31422 Score = 183 bits (202), Expect = 4e-41 Identities = 298/426 (70%), Gaps = 10/426 (2%) Strand=Plus/Plus Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| | ||||||| ||||||||||| ||||| || || ||||| || ||| | Sbjct 22876 ATCCACTTAAGCGCCCAATTGGCCTTCTTTTGAACACACGGAATAGTTTCAATAGCACGA 22935 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG---ACTATAC 50253 || || | | |||||| || ||| |||| ||||| || |||||| ||||||| Sbjct 22936 AACAGCCTGCTCTTTTCACTAGAATCCTTAATATAAGATTC---CAAAAGCAAACTATAC 22992 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 ||||||||||| || || |||||||| |||||||| ||||| ||| | ||||||| Sbjct 22993 ATTTCCGAATGGATATTCTCAATGGCAATCTGAAACCCGTAAAAAGCACGTGCCTCGGCG 23052 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 ||||| | ||| | ||| | | ||| |||||||| || ||||| || || Sbjct 23053 ATCTGTATCTCTTTCATAAACCTTGAAGCCAAATTTTCCAAAACAATTCCATCTGATGCG 23112 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA 50433 || ||||| || | || || | | || || |||| | ||||| | || Sbjct 23113 GCGAAAAATGCGAGAACGTGAGTCACGAAGTGACGTTCGCCGTCTGTTAACGACTCGTAA 23172 Query 50434 T--CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | | ||| |||| |||| ||| |||||||| ||||||||||||| || || || | Sbjct 23173 TGACGTTG--GTCTTGCGATAAATCGACTTCTTCTGCTGTCCAAAATGAGGCTTCGGCTT 23230 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 50551 |||| ||||| | ||| || | | ||||||||||| || || ||||| | ||||| Sbjct 23231 TTTTGTACATTTCCCAAATTTGTGGGTATTGGATTGGAAACATGCAGAATCTGTCTGGAT 23290 Query 50552 TTGGTG 50557 |||||| Sbjct 23291 TTGGTG 23296 >seq14165 Length=56756 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| ||||| | |||| || || | |||| | || | || |||||| | ||| ||| Sbjct 34421 CCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCCA 34480 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || || ||||||||| | ||||| |||||| ||| || Sbjct 34481 TTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGAA 34540 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| ||||| ||| || | || ||| |||||||| ||||| ||| Sbjct 34541 ACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAACGTGTCATATATG 34600 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 || || |||||||| || ||||| | || ||||||||| Sbjct 34601 CCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 34642 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | ||| ||||| || || || |||||| | | |||| | | | Sbjct 34799 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 34858 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||| | | | || || ||||| | |||||| || || || || | ||||||| Sbjct 34859 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 34918 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||| ||||||||||| || | ||| ||| || ||||| | |||||| | || | Sbjct 34919 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 34978 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| |||||||| | | || |||||| || || || ||||| Sbjct 34979 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 35025 >seq4091 Length=20028 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| ||||| | |||| || || | |||| | || | || |||||| | ||| ||| Sbjct 16137 CCTCCTTGATCAACATATCGGGCAGTATCATTAAACACACGCAGCATTGGCACAATGCCA 16196 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || || ||||||||| | ||||| |||||| ||| || Sbjct 16197 TTGGATGTTCCATTCGTTCCACGTATGTAGCTTCCAGTTGCACGGATATTATGAATAGAA 16256 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| ||||| ||| || | || ||| |||||||| ||||| ||| Sbjct 16257 ACACCAATTCCTCCTGCTGATTTGCTAATAACAGCACATTCCTTTAACGTGTCATATATG 16316 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 || || |||||||| || ||||| | || ||||||||| Sbjct 16317 CCTTCAATGCTATCTTCTTTCATGCATATCAGGAAACAGCTA 16358 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | ||| ||||| || || || |||||| | | |||| | | | Sbjct 16516 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 16575 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||| | | | || || ||||| | |||||| || || || || | ||||||| Sbjct 16576 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 16635 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||| ||||||||||| || | ||| ||| || ||||| | |||||| | || | Sbjct 16636 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 16695 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| |||||||| | | || |||||| || || || ||||| Sbjct 16696 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 16742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718088559423000