Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq945 143 3e-29 seq3314 96.9 3e-15 >seq945 Length=6199 Score = 143 bits (158), Expect = 3e-29 Identities = 240/346 (69%), Gaps = 7/346 (2%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 |||||||| ||||| ||||| | ||||| ||||| || | ||||||||||| ||| Sbjct 2220 AAACACGCGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTT 2161 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 || || ||||| || || |||||||| |||||||| || || ||| ||| ||||| Sbjct 2160 AAACCCGGCATTAACCCACGTTTTTTCAACCAAAAAATCGCGCAAAAACTCCCCGAAAAA 2101 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 ||||| || || || ||||||||| || | |||||| | || | ||| | || Sbjct 2100 AATATCCCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAG-----TTTCGGATC 2046 Query 14049 GAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 || |||||||| |||||| | | |||||| | || | || || |||||||||| Sbjct 2045 CATCAATCCATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATAG 1986 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 | |||||| | || || |||| | | ||| || | || | | || |||| Sbjct 1985 CCCGAAATAACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTAT 1926 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14212 |||||||||| || || || || || || || || || || ||||| Sbjct 1925 ACATTTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAA 1880 >seq3314 Length=31422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||||||||| || ||||| || || | |||| || | ||||||||| ||||||| Sbjct 22398 ACACGCAAAGTCGCAATGTAGTCCTTTGTCTCGTGAGATCAATTCGTTTGAGAATGTTAG 22457 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG-ACCCGGAAAAGA 13989 |||||||||||||| || ||||||||||||||||| || ||||| | || ||||| | Sbjct 22458 GCCTGGCATCAATCCGCGCTTTTTTAACCAAAATATCGC-GCAAAAGCTTCCTGAAAAAA 22516 Query 13990 ATATTCC 13996 |||| || Sbjct 22517 ATATCCC 22523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479607618255000