Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq945 125 7e-24 seq3314 96.9 3e-15 >seq945 Length=6199 Score = 125 bits (138), Expect = 7e-24 Identities = 238/347 (69%), Gaps = 9/347 (3%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 |||||||| ||||| ||||| | ||||| ||||| || | ||||||||||| ||| Sbjct 2220 AAACACGCGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTT 2161 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 13775 || || ||||| || || |||||||| |||||||| || || || || | || ||||| Sbjct 2160 AAACCCGGCATTAACCCACGTTTTTTCAACCAAAAAATCGC-GCAAAAACTCCCCGAAAA 2102 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||||| || || || ||||||||| || | |||||| | || | ||| | | Sbjct 2101 AAATATCCCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAG-----TTTCGGAT 2047 Query 13836 TGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATT 13893 || |||||||| |||||| | | |||||| | || | || || ||||| || Sbjct 2046 CCATCAATCCATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATA 1987 Query 13894 GCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 13953 || ||||| | | || || |||| | | ||| || | || | | || ||| Sbjct 1986 GCCCGAAATAACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTA 1927 Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 ||||||||||| || || || || || || || || || || ||||| Sbjct 1926 TACATTTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAA 1880 >seq3314 Length=31422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||||||||| || ||||| || || | |||| || | ||||||||| ||||||| Sbjct 22398 ACACGCAAAGTCGCAATGTAGTCCTTTGTCTCGTGAGATCAATTCGTTTGAGAATGTTAG 22457 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG-ATCCGGAAAAGA 13777 |||||||||||||| || ||||||||||||||||| || || || | ||| ||||| | Sbjct 22458 GCCTGGCATCAATCCGCGCTTTTTTAACCAAAATATCGC-GCAAAAGCTTCCTGAAAAAA 22516 Query 13778 ATATTCC 13784 |||| || Sbjct 22517 ATATCCC 22523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478468704123000