Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5280 89.7 4e-13 seq8384 86.0 5e-12 seq7910 86.0 5e-12 seq8889 84.2 2e-11 >seq5280 Length=29361 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| | ||| | ||| |||||| || | ||||||||| | Sbjct 6998 CCACCACGAAGACGGAGCACAAGATGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCA 6939 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||||| | || ||||||||||| || || || ||||| | ||| ||||| | || Sbjct 6938 AGTGTACGTCCATCTTCCAATTGTTTCCCAGCGAAGATCAACCTCTGCTGATCTGGTGGG 6879 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| || | ||||| || ||| || || || ||| || Sbjct 6878 ATCCCCTCCTTATC-CTGAATCTTGGCCTTGACATTGTCAATCGTATCAGAAGACTCCAC 6820 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || | || ||||||||||| ||||| Sbjct 6819 CTCCAAAGTGATGGTTTTCCCTGTCAAGGTCTTCACAAAAATCTGCAT 6772 >seq8384 Length=24589 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||| ||||| || |||||| || | || ||||| | | Sbjct 4040 CCACCACGAAGACGAAGAACCAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCC 3981 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| |||| || | || ||||| ||||||||||| | ||| || || | || Sbjct 3980 AAAGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 3921 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||| || ||| || || | ||| || Sbjct 3920 ATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTGTCAATGGTATCCGAACTCTCAACC 3861 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || | ||||||||||| || ||||| Sbjct 3860 TCCAAAGTAATTGTTTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 3814 >seq7910 Length=9655 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||| ||||| || |||||| || | || ||||| | | Sbjct 2276 CCACCACGAAGACGAAGAACCAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCAGCC 2217 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| |||| || | || ||||| ||||||||||| | ||| || || | || Sbjct 2216 AAAGTACGTCCGTCCTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 2157 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||| || ||| || || | ||| || Sbjct 2156 ATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTGTCAATGGTATCCGAACTCTCAACC 2097 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || | ||||||||||| || ||||| Sbjct 2096 TCCAAAGTAATTGTTTTTCCTGTCAAGGTTTTCACAAATATCTGCAT 2050 >seq8889 Length=9065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||| ||||| || |||||| || | || ||||||| | Sbjct 2070 CCACCACGAAGACGAAGAACCAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCGGCC 2011 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || || | |||||||| ||||||||||| | ||| || || | || Sbjct 2010 AAAGTACGTCCATCCTCAAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGA 1951 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | ||||| || ||| || || ||| ||| || Sbjct 1950 ATTCCTTCCTTATCTTGGATCTTAGCCTTGACGTTGTCAATGGTATC-AGAGCTCTCAAC 1892 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || | || |||||||| || ||||| Sbjct 1891 CTCCAAAGTGATGGTTTTTCCCGTCAATGTCTTCACAAAGATCTGCAT 1844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381276292564350