Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Conyza_20canadensis_20[genbank_20GCA_5F000775935.1_202014-11-13] 20,075 sequences; 326,165,195 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq945 300 2e-76 seq3314 174 2e-38 seq14165 95.1 2e-14 seq4091 95.1 2e-14 >seq945 Length=6199 Score = 300 bits (332), Expect = 2e-76 Identities = 613/901 (68%), Gaps = 20/901 (2%) Strand=Plus/Minus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || || || || || | ||| || |||||||||||||| || | ||| || || Sbjct 2509 TTTCTGATACTCCCCAACCCTTTTCTCAAAAAAATTAGTCTTCCCCTGCAACGAGATCAA 2450 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| ||||||||||||| |||||||| |||||| | | ||||| | | Sbjct 2449 CTCCATCCAATCAAACGGATTCTGCACATTATACATTTTTGAATAACCCAACGCCCCCAA 2390 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 ||| ||||| |||| | || ||||| |||||| || | |||||| || | | Sbjct 2389 CAACCTATCCGCGACATACTCAATATAAACACTCATCAAATCCCCATTCATCCCAACCAA 2330 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | || | ||| | || || || ||| || || ||||||| ||||| Sbjct 2329 AGCACACGGCAACGCCTCGCAAACGAACTCCCTTTCGATGTTTACAGCGTCTGCGATAAT 2270 Query 42013 AGATCTTACTGTTTCTTCACTCGG-TGGATA--CAATAAA-TGTTTAAACATCAAACATG 42068 | |||| ||| |||||| | || ||| ||| ||| ||| |||||| | Sbjct 2269 CCCTTTTACGCGTTCCTCACTCAACTTCATTTTCAACAAACTGTATAA----CAAACACG 2214 Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128 |||||||||| |||| |||||| ||||| || || ||||| |||||||| | || | Sbjct 2213 CGAAATCGCAATGCAAACCCTCGTCTCTCGATATCAACTCGTTTGAAAACGTTAAACCCG 2154 Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA-GAAAAGAAGATT 42187 |||||| ||||| ||||| | |||||| || | |||||| ||| ||||| || || Sbjct 2153 GCATTAACCCACGTTTTTTCAACCAAAAAATCG-CGCAAAAACTCCCCGAAAAAAATATC 2095 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATC 42244 ||||| || ||||| || |||| | ||| | || ||| | ||| ||| Sbjct 2094 CCTTCGACGCAAGCAAACGCGATAATCCGTTCTGCGAAAGTTTCGGATCCATCA---ATC 2038 Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304 || || |||||| | ||| || || | |||||||| |||||||| || || ||| Sbjct 2037 CATTTCAAAGCCCAGTTGGCTTTTTTCTCAACACAAGGAATCGTTTCAATAGCCCGAAAT 1978 Query 42305 AGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364 | ||||||||||||| |||||||| ||| | || | ||| | |||||||||||| Sbjct 1977 AACCGGTTTTTTTCATTAGAATCTTTAATATAAGATTCCAACAACAAACTATACATTTCA 1918 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 |||||||| || ||||| || || || |||||||| || | ||||||| || || Sbjct 1917 GAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAACGCACGCGCCTCGGCGACTTGG 1858 Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 |||||| | ||| || |||| | |||||| || || ||||| || || ||| Sbjct 1857 ACTTCTTTCATAAACCGACCAGCGAGGTTTTCGAGAACGATGCCGTCTGACGCGGCGAAA 1798 Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT--CAT 42542 || || | || || | || || | |||| | ||||| | ||| | | | Sbjct 1797 AAAGCGAGGACGTGAGTAATGAAGTGGCGTTCGCCGTCGGTTAAGGCGTCCCAGTGACGT 1738 Query 42543 TGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTAT 42602 || ||||| |||| ||| |||||||| | ||||||||||| ||||| || ||||||| Sbjct 1737 TG--ATCTTCGGATAAATCGACTTCTTCGGCGGTCCAAAATGAGGCTTCGGCTTTTTTAT 1680 Query 42603 ACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTG 42662 |||| | |||||| | | |||||||||||||| ||| |||| || ||| ||||||| Sbjct 1679 ACATTTCCCAGATTTGTGGGTATTGAATTGGGAACATACAGAATCGATCTGGGTTTGGTG 1620 Query 42663 C 42663 | Sbjct 1619 C 1619 >seq3314 Length=31422 Score = 174 bits (192), Expect = 2e-38 Identities = 296/426 (69%), Gaps = 10/426 (2%) Strand=Plus/Plus Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| | ||||||| ||||||||||| ||||| || || ||||| || ||| | Sbjct 22876 ATCCACTTAAGCGCCCAATTGGCCTTCTTTTGAACACACGGAATAGTTTCAATAGCACGA 22935 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG---ACTATAC 42358 || || | | |||||| || ||| |||| ||| | || |||||| ||||||| Sbjct 22936 AACAGCCTGCTCTTTTCACTAGAATCCTTAATATAAGATTC---CAAAAGCAAACTATAC 22992 Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418 ||||| ||||| || || |||||||| |||||||| ||||| ||| | ||||||| Sbjct 22993 ATTTCCGAATGGATATTCTCAATGGCAATCTGAAACCCGTAAAAAGCACGTGCCTCGGCG 23052 Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | ||||| ||| | ||| | | ||| |||||||| || ||||| || || Sbjct 23053 ATCTGTATCTCTTTCATAAACCTTGAAGCCAAATTTTCCAAAACAATTCCATCTGATGCG 23112 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAA 42538 || ||||| || | || || | | || | |||| | |||||| | || Sbjct 23113 GCGAAAAATGCGAGAACGTGAGTCACGAAGTGACGTTCGCCGTCTGTTAACGACTCGTAA 23172 Query 42539 T--CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 | | ||| |||| |||| ||| ||||||||| | ||||||||||| ||||| || | Sbjct 23173 TGACGTTG--GTCTTGCGATAAATCGACTTCTTCTGCTGTCCAAAATGAGGCTTCGGCTT 23230 Query 42597 TTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGAT 42656 |||| ||||| | ||| || | | ||||| ||||| || || ||||| | ||||| Sbjct 23231 TTTTGTACATTTCCCAAATTTGTGGGTATTGGATTGGAAACATGCAGAATCTGTCTGGAT 23290 Query 42657 TTGGTG 42662 |||||| Sbjct 23291 TTGGTG 23296 >seq14165 Length=56756 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||| || | ||| ||||| || || || |||||| | | |||| | | | Sbjct 34799 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 34858 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || |||| | | | || || ||||| | ||| || || || || || | ||||||| Sbjct 34859 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 34918 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || || ||||||||||| || | ||| ||| || ||||| | || ||| | || | Sbjct 34919 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 34978 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| |||||||| | | || |||||| || || || ||||| Sbjct 34979 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 35025 >seq4091 Length=20028 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||| || | ||| ||||| || || || |||||| | | |||| | | | Sbjct 16516 GTTCCGGCATTGAAAAGGGTGGGAGATGCATGGGTGAACCATCTCTGTGACATCAAGTGG 16575 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || |||| | | | || || ||||| | ||| || || || || || | ||||||| Sbjct 16576 TATGTCTTGAGAACAGAATCAATATCATCCTTATGAATCCCAACAGCAACTCTCATTAAC 16635 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || || ||||||||||| || | ||| ||| || ||||| | || ||| | || | Sbjct 16636 ATGTGTTGAGGTCTTTCTACAACCTTCCCATTGATCTTCAAAAGATAAGATCTCTCAAGG 16695 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| |||||||| | | || |||||| || || || ||||| Sbjct 16696 GTTTTGAAACCAAAGAAATCATAGTCAAAGTCCCGGTCATATATAAT 16742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670970786007000